Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g06647 ATGGCACTCAGTGGTGGGTCTTGTTGGATCATATTCTTCTTCCTATTATGTGTTGTTGTCTCTTCTGGGGCTTCTGACACAGAAGTGCTCCTAAAGGTGAAGGAGAACCTGCAAAACAATAATGCATTATCCTCATGGAACACATCATCCCCTCCTTGTTCAGGTGATCATAACAATTGGCGTGGGGTTCTCTGCAATCAAGGAAAAGTATGGGGCTTGAAGCTTGAGAATATGGGGCTCAAAGGGTTCATTGATGTGGACTCCCTCAAGGAATTACCATATCTTAGAACCATAAGTTTCATGAATAATGATTTGGAAGGTCCATGGCCAGAAATAAATAAGATAGTTGGTCTCAAATCCATTTTCCTTTCAAATAACAAGCTTTCTGGGGAGATCCCTGCAAGAACTTTTGAGGGCATGCAGTGGTTGAAGAAAATCCATTTGTCAAACAACCACTTTACCGGTCTTATTCCACCTTCTCTGGTATTGTTGCGAAGGCTTGTGGAATTAAGGTTGGAGGGAAACAAATTCAATGGCCTCATTCCTCATCTTAGAGAAAACCAATTGAAATCATTTAGCGTAGCTAATAATCAGTTGCGGGGCGAAATACCATCCACCCTTAGTAAAATGGCCGTTTCTGCCTTTTCTGGTAATGAAGACTTATGTGGAGACCCGTTGGTTTCATGCCATTCCAAGAAGCCCTCAATTGTTAGTATCATTGTGGTTGCGGTCGTTGTTGGTTTGGCAGTGATTGTGATTGCAGCTGTAATAATCATCATCCTTCATCGAAGAAAACAAGGAGCATCAAGTTCAGTGGAAGATCCACCTAGCCTCACCAAAGGACGTGTGAGGGAATCAGGTGATGAAAGCCACAGGTCTTCAAGATCAATGAGCTCCAACCACAGCAGAAGAGGAGACCACATGAAGTTATCTTTCATCAGGGATGACAGGGAGAGGTTTGATTTGCAAGAGTTGCTGAGAGCCTCAGCTGAGATTTTGGGCAGTGGCTGTTTCAGTTCTTCTTACAAGGCTTCTTTGATGAATGGCCCAACAATAGTCGTGAAGAGGTTCAAGCAAATGAACAATGTAGGGAAGGAAGAGTTTCAAGAGCACATGAGAAGGATAGGAAGGTTGAGTAGTCCTAATCTGCTTCCTCTTGTGGCTTATTATTATAGAAAGGAGGAAAAGCTCTTGGTTACCGACTATGTTCAGAATGGCAGCCTTGCTGTTCGCCTTCATGGACACCAAGCTCTAGGGGAACCAAGCCTTGATTGGCCAATCCGGTTGAAGATTGTGAAAGGCATAGCAAAAGGTCTTGAATATCTATACAAGGATATGCCAAGCCTAATTGCACCACATGGAAATCTAAAGTCCTCTAATGTTCTTCTGACTCAATCTTTTGAGCCCCTCCTCACTGACTATGGATTAGTCCCTGTGACCAACCAGGACATGGCACAGGACATCATGGTGATCTACAAGTCACCTGAATATTTGCAGCATGGAAGAATAACAAAGAAGAGTGATGTGTGGTGTCTTGGAACACTAATTCTGGAGATTCTAACGGGCAAGTTCCCTGCTACCTTTATGCAACAGGGTAAAGGAAGTGAGGTAAGTTTGTCAAATTGGGTCCATTCAATTGTCCCAGAAGAATGGACTAGTGCTGTGTTTGATAAAGATATGGGGGCAACCAAGAACAGTGAGGGAGAGATAGTGAAGCTTTTGAAGATTGCCTTGAGTTGTTGTGAAGGTGATGTGGAGAAGAGATCTGATTTGAAAGAAGTAGTAGAGAAAATCCAAGAGGTTAAAGAGAGGGATAATGATGAGGAATTTTATACTTCTTATGCTAGTGAAGCAGACATGAAGCCTTAA 1869 0.4286 MALSGGSCWIIFFFLLCVVVSSGASDTEVLLKVKENLQNNNALSSWNTSSPPCSGDHNNWRGVLCNQGKVWGLKLENMGLKGFIDVDSLKELPYLRTISFMNNDLEGPWPEINKIVGLKSIFLSNNKLSGEIPARTFEGMQWLKKIHLSNNHFTGLIPPSLVLLRRLVELRLEGNKFNGLIPHLRENQLKSFSVANNQLRGEIPSTLSKMAVSAFSGNEDLCGDPLVSCHSKKPSIVSIIVVAVVVGLAVIVIAAVIIIILHRRKQGASSSVEDPPSLTKGRVRESGDESHRSSRSMSSNHSRRGDHMKLSFIRDDRERFDLQELLRASAEILGSGCFSSSYKASLMNGPTIVVKRFKQMNNVGKEEFQEHMRRIGRLSSPNLLPLVAYYYRKEEKLLVTDYVQNGSLAVRLHGHQALGEPSLDWPIRLKIVKGIAKGLEYLYKDMPSLIAPHGNLKSSNVLLTQSFEPLLTDYGLVPVTNQDMAQDIMVIYKSPEYLQHGRITKKSDVWCLGTLILEILTGKFPATFMQQGKGSEVSLSNWVHSIVPEEWTSAVFDKDMGATKNSEGEIVKLLKIALSCCEGDVEKRSDLKEVVEKIQEVKERDNDEEFYTSYASEADMKP. 623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g06647 622 Gene3D Phosphorylase Kinase; domain 1 292 402 - -
Seca12g06647 622 Coils Coil 588 608 - -
Seca12g06647 622 FunFam Pollen receptor-like kinase 1 403 612 - -
Seca12g06647 622 Pfam Leucine rich repeat 117 177 IPR001611 GO:0005515
Seca12g06647 622 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 12 606 IPR046959 -
Seca12g06647 622 Gene3D Ribonuclease Inhibitor 23 186 IPR032675 -
Seca12g06647 622 MobiDBLite consensus disorder prediction 269 308 - -
Seca12g06647 622 Pfam Protein tyrosine and serine/threonine kinase 331 598 IPR001245 GO:0004672|GO:0006468
Seca12g06647 622 Gene3D Transferase(Phosphotransferase) domain 1 403 614 - -
Seca12g06647 622 Gene3D Ribonuclease Inhibitor 188 229 IPR032675 -
Seca12g06647 622 FunFam pollen receptor-like kinase 1 295 402 - -
Seca12g06647 622 ProSiteProfiles Protein kinase domain profile. 327 611 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g06647 622 MobiDBLite consensus disorder prediction 278 308 - -
Seca12g06647 622 SUPERFAMILY L domain-like 50 210 - -
Seca12g06647 622 Pfam Leucine rich repeat N-terminal domain 25 66 IPR013210 -
Seca12g06647 622 SUPERFAMILY Protein kinase-like (PK-like) 331 602 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g06647 Seca-Chr12 158557183 158560703 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g06647 8 619 Receptor kinase-like Gene Family AT5G35390 52.886 0.0 655
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Seca12g06647 PK_Tyr_Ser-Thr 8.4e-29 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g06647 - - gmx:100804368 934.865