Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g06643 ATGGGGATTTGCTTCAGCATTGAAGATCAAAATCACCTCTCTGTCTCCGATTCAAATACAAAGCCCAAAGCTGCAGGCGTCGGGTCAGTAGGACATGAATCCGGTGCACCAACGACTCCATTAGGTTCGAGTCCCATGAATATCAAAGATCTTCGCCAAAGTGCTGGATACAGCAACGTTGATATTTTTACCTATGAGGAGCTGAGGCTTGCCACAAAGCACTTTCGTCCCGATTTAATCCTGGGAGAAGGTGGCTTTGGAGTTGTATATAAAGGAGTCATAGATGATAGTGTCAGGGCAGGTTACAAATCCACGGAAGTTGCCATTAAGGAGCTTAATCGCGAAGGTTTTCAAGGCGATAGGGAATGGCTCGCTGAAGTTAACTATTTAGGTCAATTCAGTCACCCAAATCTTGTGAAGCTCATTGGATACTGCTGCGAGGATGAACACCGGTTGTTGGTCTATGAATACATGGCGAGCGGGAGCTTGGAGAAACATCTCTTTCGCATGGGATCAACATTGACGTGGTCAAAAAGAATGAAGATTGCTTTACACGCTGCAAGAGGGCTTGCTTTTCTTCATGGTGCAGAAAGGCCCATCATATATCGTGACTTCAAGACTTCAAATATCTTGCTAGATGCGGTTTGTTGTCTTCTAGACCTGCAGGATTTCAATGCAAAGCTTTCAGACTTTGGCCTTGCAAAGGATGGGCCGATGGGGGACCAAACCCATGTTTCAACACGAGTAATGGGAACATATGGATATGCTGCTCCGGAGTATGTCATGACCGGCCATTTGACAGCTCGAAGCGATGTGTATGGTTTTGGGGTGGTGCTACTTGAATTGCTTATTGGTAGGAGAGCATTAGACAAGAGCAGGCCCAGCCGAGAGCACAACTTGGTTGAGTGGGCACGCCCGCTATTAAATCATAATAAAAAACTTCTGAAAATTTTAGACCCAAAAATAGAAGGGCAATACTCCAGTAAAACTGCAATAAAGGTGGCCCATTTAGCATACCAATGTCTCAGCCAAAACCCGAAAGGCAGACCTCTCATGAGCCAGGTTGTTGAAATTCTTGAAAACTTTCAGTCAAAGGGGGAAAATGAGGAAGATCAAATGCTTCAAAGTGGTGGTAGCAGTATAACCATTTACGAGGTTCCAAAGGGCAGCAATGACACTCCAACTTAG 1188 0.4512 MGICFSIEDQNHLSVSDSNTKPKAAGVGSVGHESGAPTTPLGSSPMNIKDLRQSAGYSNVDIFTYEELRLATKHFRPDLILGEGGFGVVYKGVIDDSVRAGYKSTEVAIKELNREGFQGDREWLAEVNYLGQFSHPNLVKLIGYCCEDEHRLLVYEYMASGSLEKHLFRMGSTLTWSKRMKIALHAARGLAFLHGAERPIIYRDFKTSNILLDAVCCLLDLQDFNAKLSDFGLAKDGPMGDQTHVSTRVMGTYGYAAPEYVMTGHLTARSDVYGFGVVLLELLIGRRALDKSRPSREHNLVEWARPLLNHNKKLLKILDPKIEGQYSSKTAIKVAHLAYQCLSQNPKGRPLMSQVVEILENFQSKGENEEDQMLQSGGSSITIYEVPKGSNDTPT. 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g06643 395 Gene3D Phosphorylase Kinase; domain 1 49 157 - -
Seca12g06643 395 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 158 373 - -
Seca12g06643 395 ProSitePatterns Serine/Threonine protein kinases active-site signature. 200 212 IPR008271 GO:0004672|GO:0006468
Seca12g06643 395 CDD STKc_IRAK 81 362 - -
Seca12g06643 395 PANTHER OS01G0588500 PROTEIN-RELATED 34 363 - -
Seca12g06643 395 Pfam Protein tyrosine and serine/threonine kinase 81 359 IPR001245 GO:0004672|GO:0006468
Seca12g06643 395 SUPERFAMILY Protein kinase-like (PK-like) 54 360 IPR011009 -
Seca12g06643 395 ProSiteProfiles Protein kinase domain profile. 75 362 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g06643 395 ProSitePatterns Protein kinases ATP-binding region signature. 81 110 IPR017441 GO:0005524
Seca12g06643 395 MobiDBLite consensus disorder prediction 15 45 - -
Seca12g06643 395 MobiDBLite consensus disorder prediction 368 395 - -
Seca12g06643 395 FunFam Serine/threonine-protein kinase BIK1 42 157 - -
Seca12g06643 395 MobiDBLite consensus disorder prediction 367 395 - -
Seca12g06643 395 Gene3D Transferase(Phosphotransferase) domain 1 158 383 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g06643 Seca-Chr12 158461887 158467789 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g06643 4 359 Glycoside Hydrolase AT3G07070 44.199 1.49e-99 300
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Seca12g06643 PK_Tyr_Ser-Thr 1.3e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g06643 - - gmx:100800465 703.745