Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g06628 ATGGCAGAGGAGTTCTCATTCCACACTCACAAACTGCACCTCTTACTCTTACATTGGCTATGCTTATTTTATTTCTCACTAACACTCCTCACTGTGACAGGATCACCAACGACCATGTCCATGGATCATGTGAAGCCCTCAACCCCTCTCGTTTCCTTTCTCGAACGCCTCCAAGAAACCGCATTCAAAACCTTCGGCAACTCCAACTTCGACCCCAAAACCTACGTCGACTTGCCCCTCAAGTTCAGCCTCTCCGTCACAGAGCACGCATTCCAGAACCTTCCAAAGGACGCTAACGGTTCCGTCCCTGTCGATGACTTGAAGCGGTTTCTAGAAGCTTACTTCGAAGGTGCAGGGGATGATTTGGTGTACCTTGAACCAGCGGATTTCGTGCCAGAGCCAGAGGGTTTCTTGCCCAAAGTGAAACACCCTGAGATAAGGGCGTGGGCGCTTCAGGTTCATTCCCTTTGGAAAAACTTGAGCAGGAAAATATCCAGTGAGGTGCACACCCACCCACAGTTGCATACACTGCTTCCTCTTCCAGCTTCTGTTGTCATTCCTGGTTCGCGATTTCGTGAGGTCTATTACTGGGACTCCTACTGGGTAATTAGGGGCTTGCTGGTGAGTAAAATGCATAAGACTGCTAAAGCTGTTGTCACCAATCTCATTTCCTTCATAGAGGAATATGGGTTTGTGCTTAATGGTGCTAGAGCATACTATACTAACAGGAGCCAGCCCCCCCTTTTAAGCGCTATGATTTATGAGATATACTGTAGCACTGGTGATATAGAATTAGTTAAAAGATCTCTACCTGCACTACTGAAAGAGTATGAGTTTTGGAATTCAGATATACATAAAGTGACCATTTTGGATGCTCAAGGTTGCACTCACACCTTAAATCGTTATCATGCAATGTGGAACAAACCCAGGCCAGAATCGGCCACGATGGACAAGGCATCAGCTTCCAAGTTCTCGAATGTGTCAGAAAAACAACAATTTTACCTTGACCTGGCATCAGCTGCTGAATCAGGATGGGATTTCAGCACAAGATGGATGAGAGATCCTCCTCATTTCACCACATTGTCTACAACATCAGTGATACCCGTTGATTTAAATGCATATCTACTTGGGATGGAACTTAATATTGCCTTCTTTGCAAAAGTTACTGGAGATAATAGTACTGCTGAACACTTCATGGAAATTTCTGATGCTAGAAAGAAGGCAATAAACTCTGTTTTCTGGAATTCAAACATGAAACAATGGCTTGATTACTGGCTCGAAAATAGAAACTCTGAGGAGGTTCATGTTTGGAAAACCCTGCAGCAGAATAAAAATATATTTGCTTCCAATTTTGTTCCTTTGTGGATGAAGCCATTTCACTCAGATACTTCACTTGTGGGTAGTCTTGTTGAAAGCCTCAAAACTTCTGGCCTGCTTCGTGCTGCTGGAATTGCAACTTCTTTGAGTAATTCAGGACAACAGTGGTAA 1488 0.4415 MAEEFSFHTHKLHLLLLHWLCLFYFSLTLLTVTGSPTTMSMDHVKPSTPLVSFLERLQETAFKTFGNSNFDPKTYVDLPLKFSLSVTEHAFQNLPKDANGSVPVDDLKRFLEAYFEGAGDDLVYLEPADFVPEPEGFLPKVKHPEIRAWALQVHSLWKNLSRKISSEVHTHPQLHTLLPLPASVVIPGSRFREVYYWDSYWVIRGLLVSKMHKTAKAVVTNLISFIEEYGFVLNGARAYYTNRSQPPLLSAMIYEIYCSTGDIELVKRSLPALLKEYEFWNSDIHKVTILDAQGCTHTLNRYHAMWNKPRPESATMDKASASKFSNVSEKQQFYLDLASAAESGWDFSTRWMRDPPHFTTLSTTSVIPVDLNAYLLGMELNIAFFAKVTGDNSTAEHFMEISDARKKAINSVFWNSNMKQWLDYWLENRNSEEVHVWKTLQQNKNIFASNFVPLWMKPFHSDTSLVGSLVESLKTSGLLRAAGIATSLSNSGQQW. 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g06628 495 PRINTS Glycosyl hydrolase family 37 signature 366 383 IPR001661 GO:0004555|GO:0005991
Seca12g06628 495 PRINTS Glycosyl hydrolase family 37 signature 229 247 IPR001661 GO:0004555|GO:0005991
Seca12g06628 495 PRINTS Glycosyl hydrolase family 37 signature 487 495 IPR001661 GO:0004555|GO:0005991
Seca12g06628 495 PRINTS Glycosyl hydrolase family 37 signature 409 425 IPR001661 GO:0004555|GO:0005991
Seca12g06628 495 PRINTS Glycosyl hydrolase family 37 signature 299 316 IPR001661 GO:0004555|GO:0005991
Seca12g06628 495 PRINTS Glycosyl hydrolase family 37 signature 334 351 IPR001661 GO:0004555|GO:0005991
Seca12g06628 495 Pfam Trehalase 69 495 IPR001661 GO:0004555|GO:0005991
Seca12g06628 495 Gene3D - 59 495 IPR012341 GO:0005975
Seca12g06628 495 SUPERFAMILY Six-hairpin glycosidases 65 495 IPR008928 GO:0005975
Seca12g06628 495 PANTHER TREHALASE 46 495 IPR001661 GO:0004555|GO:0005991
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g06628 Seca-Chr12 158329075 158333328 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g06628 44 495 Trehalose Biosynthesis Gene Families AT4G24040 58.333 0.0 559
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g06628 K01194 - gmx:547539 777.319