Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g06613 ATGGGTGTTCCACAAACTCCAACCCCCTCTCCACATGTGTATCCACAGGAACTTCAGCTTAAACTTTACCAGGCTTTCATATTCTCAATTCCCATACTCTTTTCCATTATTTTGGTTCTGCTGTTTTACTTGTTCTACCTCAAGAGGAGGGCTTCCTCTCTCTCATCTCCTCCTCTCCACATATTTCCCAGGACTGCCAATTCTCAAACTTCATATTCATATCATTCCTCTGTAAGTAAGACTCTCTCTCTCTCTCTCTTCATATGTTGTGTTTGTTTGGGAGAATTTGAGCTGAAAGAAGAGCTGCTACAGATTCCTTATTGCAAGCATGTGTTTCACATAGACTGCATACATAATTGGCTGCAATCAAACTCCACATGTCCACTTTGTAGATGTTCCATAATCCCCACGGCCAAGTTCCTTAATCCAGCACCATCTATTATTGTAGCAGACCCACCTCAGCAGGGTAGCATTTCAGGCTCTTCATCACACAGCATATCATTGCCTCCTCAACTAGAATATGAAGCTGGTGCTTCCTCAAATAGTAATACTACCATTTTTCAAGGGAATGATGTATTAATGAGGTAG 588 0.4167 MGVPQTPTPSPHVYPQELQLKLYQAFIFSIPILFSIILVLLFYLFYLKRRASSLSSPPLHIFPRTANSQTSYSYHSSVSKTLSLSLFICCVCLGEFELKEELLQIPYCKHVFHIDCIHNWLQSNSTCPLCRCSIIPTAKFLNPAPSIIVADPPQQGSISGSSSHSISLPPQLEYEAGASSNSNTTIFQGNDVLMR. 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g06613 195 CDD RING-H2_EL5-like 88 131 - -
Seca12g06613 195 SUPERFAMILY RING/U-box 88 138 - -
Seca12g06613 195 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 16 151 - -
Seca12g06613 195 ProSiteProfiles Zinc finger RING-type profile. 89 131 IPR001841 -
Seca12g06613 195 SMART ring_2 89 130 IPR001841 -
Seca12g06613 195 Pfam Ring finger domain 89 131 IPR001841 -
Seca12g06613 195 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 59 136 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g06613 Seca-Chr12 158213823 158215568 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g06613 3 136 C3H Transcription Factor Family AT4G10150 37.333 1.27e-27 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g06613 K19039 - gmx:100806554 233.032