Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g06608 ATGGAGGACGATGAAACCAAAGGAAGAATCGAAGAAACTGTTCGGAGGATTTTGGAAGAATCAGACATGGACAAGGTTACTGAGTCCAAAATTCGAAAGCAGGCCTCCAGTGAACTGGGCCTCGACCTATCTCAAACTCACTTCAAAGCCTTCGTGAAACAGGTCGTAGAAGCTTTTCTCCAAGAGAAGCAACAGCAACAAGAGGAGGTGGAGGAGGAGGAAGAACAGCAACAGGGTGTTTCCAAGGACAAGGAGTTCGATGATGAGGGCGATCTCATCATCTGCAAGCTTTCAGAGAAGAGAAAGGTGACCATTCAGGATTTCAGAGGAAAAACCTTGGTCTCCATTCGGGAGTTTTATAGAAAAGATGGCAAAGAGCTTCCTACTTCCAAAGGAATAAGTTTGACAGAGGAGCAGTGGTCAGCCTTCAAGAAAAATGTGCCTGCCATAGAAAAAGCCATTAAGAAAATGGAGTCACGCACATAA 486 0.4506 MEDDETKGRIEETVRRILEESDMDKVTESKIRKQASSELGLDLSQTHFKAFVKQVVEAFLQEKQQQQEEVEEEEEQQQGVSKDKEFDDEGDLIICKLSEKRKVTIQDFRGKTLVSIREFYRKDGKELPTSKGISLTEEQWSAFKKNVPAIEKAIKKMESRT. 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g06608 161 Coils Coil 53 83 - -
Seca12g06608 161 PIRSF RNA_polymII_KELP 1 161 IPR017415 -
Seca12g06608 161 Gene3D Transcriptional Coactivator Pc4; Chain A 84 160 IPR009044 GO:0003677|GO:0006355
Seca12g06608 161 SUPERFAMILY ssDNA-binding transcriptional regulator domain 94 156 IPR009044 GO:0003677|GO:0006355
Seca12g06608 161 PANTHER RNA POLYMERASE II TRANSCRIPTIONAL COACTIVATOR 5 160 IPR045125 GO:0003713|GO:0060261
Seca12g06608 161 ProSiteProfiles DEK C-terminal (DEK-C) domain profile. 4 61 IPR014876 -
Seca12g06608 161 Gene3D - 2 63 - -
Seca12g06608 161 FunFam RNA polymerase II transcriptional coactivator KELP 84 160 - -
Seca12g06608 161 Pfam Transcriptional Coactivator p15 (PC4) 95 146 IPR003173 GO:0003677|GO:0006355
Seca12g06608 161 SUPERFAMILY DEK C-terminal domain 6 61 - -
Seca12g06608 161 MobiDBLite consensus disorder prediction 63 85 - -
Seca12g06608 161 Pfam DEK C terminal domain 6 60 IPR014876 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g06608 Seca-Chr12 158178714 158181283 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Coactivator p15 Seca12g06608 DEK_C 7.4e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g06608 K25815 - gmx:100305633 248.054
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g06608 12 158178714 158181283 Seca12g06608 12 158178714 158181283 ECH