Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g06604 ATGGAAGCGGATTTCGCGACGAATGATATGCTCACGCTCACACAGGACTCGTTTGATGCCCTCGATAACGATAATGTAGATATTGAAGGGGAAAGATGTGGAATATGCATGGACGTTGTTATTGACAGGGGAGTTCTAGATTGCTGTCAGCACTGGTTCTGTTTTGTATGCATTGACAACTGGGCAACCATCACTAATCTATGCCCACTTTGCCAGAATGAGTTTCAGTTGATCACTTGTGTTCCAGTATATGATACCATTGGAGGCAATAAAGTTGAAGAAGACTCATTCTTCAGAGATGATGACTGGTCCATCGAAGGGAAGAATAACACACTGTCATTTCCCTCCTACTACATTGATGAAAATGCAGTTATTTGCTTGGATGGCGATGGCTGCAAAGTTCGAAATGGATTGGCAACTACCGAAGGAGATTCTGGTCTTGATACATCAATTGCATGTGATTCATGTGATATATGGTATCATGCCTTCTGTGTGGGATTTGATACTGAAGGTACATCTGACAGTACATGGTTATGCCCAAGATGTGTGGTTGATGGAGTTTTGAAAGGAACAGATACCAATTCAATAGAGAGGGAAACCGTGGAATGTAATCCAGATAATTGTAACAGTGAATGCCATGCTGAGGATTCCTTTTCTGGAAAAGTTTCTGTGTCTATTGCTGATGCTGGAGAGACAGCTGTTGTTGTCTCGATGGTTGACAGAAATAAATCGGTTCCAGCAACAAGTGAGAAAAGCTTTATGACTCTTGAAGTTGATGGGGATCCACTGATTGAATCATGTAATTCAATGTCAGATACAAATAATCAGCAGCAGGGGACAAAGAATACAACTATGCCACCAATCATGGAGGGAAACGAGCCGGAGCTGTCATTATCAAACAACAATATATCCTGTAACCTAACTTCTAAATCCTTCGTGCATAATGATTTAAAGAAAAGTGATGATGGAGCAAGGAATGAACTGAGTAGCTTTGATGGAACCAAGTTATTAGATGAGTCCCATGGCAAAACTAGTCCATCCAGAATTGAATCTGATTTGGGTCTTCATCTCGGTTTGTCAGTGGGCTCTTTTTTATCTCTTGATAATGCGGACAAGAATGAAACAAACGATCAAGCAACCGATATCTTGCGCTTGAGTCCAGAAAAAAATCTTCTGAAAGGAGATGAAATAGAAACCGATGCTTGTAAGGGCAATGCCAGAGTGACTGGTGGGAAGAGGAAGCATGTTGATTACAGTTATGAGCAAGTTCATGTAAAAGCTGATGATGGAGATGCCAAGCCTGAACTTTCAGTTGAAGTTTCACAAAAGAAAATTAGAGCATCTGGTAGTCAGATGACTGGTGCTGATGACTCGACTGATGCTCATCTTTCTGACAATGCTAAAAAAAACCCTGCCTTTCTAAAACATTCTCCAACGAAGGAGATTGTGGCATCAGATATAATGAATATAGTTAAAGGGACAAACCGTAGGCCTTCCAAGGGACTTGCTGACACTAATGCTTGTGACAAGTTAGGTGAAAAGAAAGAAAATATGGCTGGATTGAGAGTGAAAAAGATTATGAAGAGAGTTTCTGATGATGGAGAATCATCCTCAGTAGTTCAAAATTTAAGGAAGGAAATTAGAGAAGCTGTCCGTAACAAATCCTCCATAAACTTTGAGGAAAATCATTTTGATGCAAAGCTTCTTGAAGCATTTAGGGCTGCCATAGCAGGGCCAAAAACTGAACCTGTTAACAAGTTATCCCGTTCAGCTCTAAAGGCAAAGAAATCAATGTTGCAGAAAGGAAAAGTACGTGAACATCTAACAAGGAAAATTTTTGGGACTTCCAATGGAAGAAGAAAGCGTGCATGGGATAGGGACTGTGAAATTGAGTTTTGGAAATATCGTTGCATGAGAGCTACAAAACCTGAAAAGATCGAAACTTTAAAGTCAGTTCTTGATCTACTTAGAAAAAGTTCAGAGAGCCCAGAATCAAAGCAAGATCCTGAATGTCAAGCAAAGAATCCTATTCTTTCCAGGTTGTATTTAGCAGATACATCTGTTTTCCCACGGAAGGAGGATTCCGTACTTAAAACTATTGCTAGCTCAGAGCAGACTAAACAAAATAACCCATCAGGAAAAGGACCAAATCTATCTCTTGATAACAATACTATTAAAACAACAGAGGTAAATAATCTTTTATCAAAGACCAGAGTTTGTTCATCTGAGAAAAAGGTAGATAAGAAGATTGTACATGGTCCAGCTGGTAAAGTACATTTAAGCAGTCACTCAGAAGGGACATCAGTTTCTTCCTCAGATGGTGCGAAAGTGGGCCTTAAATCTGATTCTATGAAGACTGATAAAAGAAAATGGGCATTGGAGGTTCTTGCGAGGAGAACAGCTGCTGCAAGCGGGAACACAGCAAATGAAAGTCAGGAAGACAATGCAACTCTCAAAGGAAATTATCCTTTGCTTGCCCAATTACCAACTGATATGAGACCAGTATTGGCACCTTGTCGTCACAATAAAATTCCCATATCAGTGAGGCAGGTATGCTGCACCTTTTGTTTCTACCTTTATAAGTTACATGTGTTAGATTGGGGAAGAAAACTCAAGATAAAAAAAGCAATGCACTTTTCTTTTTGTACACTGGATGCTTCTAATAATGGAACCAATAGGCAGAGATTCGAGTAA 2694 0.3983 MEADFATNDMLTLTQDSFDALDNDNVDIEGERCGICMDVVIDRGVLDCCQHWFCFVCIDNWATITNLCPLCQNEFQLITCVPVYDTIGGNKVEEDSFFRDDDWSIEGKNNTLSFPSYYIDENAVICLDGDGCKVRNGLATTEGDSGLDTSIACDSCDIWYHAFCVGFDTEGTSDSTWLCPRCVVDGVLKGTDTNSIERETVECNPDNCNSECHAEDSFSGKVSVSIADAGETAVVVSMVDRNKSVPATSEKSFMTLEVDGDPLIESCNSMSDTNNQQQGTKNTTMPPIMEGNEPELSLSNNNISCNLTSKSFVHNDLKKSDDGARNELSSFDGTKLLDESHGKTSPSRIESDLGLHLGLSVGSFLSLDNADKNETNDQATDILRLSPEKNLLKGDEIETDACKGNARVTGGKRKHVDYSYEQVHVKADDGDAKPELSVEVSQKKIRASGSQMTGADDSTDAHLSDNAKKNPAFLKHSPTKEIVASDIMNIVKGTNRRPSKGLADTNACDKLGEKKENMAGLRVKKIMKRVSDDGESSSVVQNLRKEIREAVRNKSSINFEENHFDAKLLEAFRAAIAGPKTEPVNKLSRSALKAKKSMLQKGKVREHLTRKIFGTSNGRRKRAWDRDCEIEFWKYRCMRATKPEKIETLKSVLDLLRKSSESPESKQDPECQAKNPILSRLYLADTSVFPRKEDSVLKTIASSEQTKQNNPSGKGPNLSLDNNTIKTTEVNNLLSKTRVCSSEKKVDKKIVHGPAGKVHLSSHSEGTSVSSSDGAKVGLKSDSMKTDKRKWALEVLARRTAAASGNTANESQEDNATLKGNYPLLAQLPTDMRPVLAPCRHNKIPISVRQVCCTFCFYLYKLHVLDWGRKLKIKKAMHFSFCTLDASNNGTNRQRFE. 898
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g06604 897 Pfam Ring finger domain 32 72 IPR001841 -
Seca12g06604 897 ProSiteProfiles Zinc finger PHD-type profile. 65 185 IPR019787 -
Seca12g06604 897 MobiDBLite consensus disorder prediction 445 460 - -
Seca12g06604 897 MobiDBLite consensus disorder prediction 751 781 - -
Seca12g06604 897 MobiDBLite consensus disorder prediction 761 777 - -
Seca12g06604 897 Coils Coil 540 560 - -
Seca12g06604 897 ProSitePatterns Zinc finger RING-type signature. 49 58 IPR017907 -
Seca12g06604 897 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 129 183 IPR013083 -
Seca12g06604 897 PANTHER RING FINGER PROTEIN 41, 151 114 856 - -
Seca12g06604 897 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 15 93 IPR013083 -
Seca12g06604 897 Pfam PHD-finger 148 183 IPR019787 -
Seca12g06604 897 MobiDBLite consensus disorder prediction 701 724 - -
Seca12g06604 897 SMART ring_2 33 71 IPR001841 -
Seca12g06604 897 SMART ring_2 123 182 IPR001841 -
Seca12g06604 897 MobiDBLite consensus disorder prediction 445 472 - -
Seca12g06604 897 SUPERFAMILY RING/U-box 19 78 - -
Seca12g06604 897 ProSiteProfiles Zinc finger RING-type profile. 33 72 IPR001841 -
Seca12g06604 897 SMART PHD_3 131 183 IPR001965 -
Seca12g06604 897 SUPERFAMILY FYVE/PHD zinc finger 147 185 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g06604 Seca-Chr12 158128447 158138960 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g06604 33 125 C3H Transcription Factor Family AT3G58030 29.000 5.23e-07 51.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Seca12g06604 PHD 3.3e-08 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g06604 - - gmx:100808102 1298.49
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g06604 12 158128447 158138960 Seca12g06604 12 158128447 158138960 ECH