Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g06596 ATGGCTTCCTTAGCCCTAATCTATGTATTTTACGTCTCTGTTTTCCATCTTCAAAGTACCAAAGCCAAACAAATTTGCAATAGCTTATCATGCGGCGATATTGATATCCAGTTTCCTTTCGGATTGAAAGAAGCTAATCAAGACCGTCACTGTAGCTATTACCCCATTCCAAGCTTCCAACTTTCGTGCAACAACCGTAGCCAAACCATTCTGAGGCTCCCAAATACAGGGGAGTTAGTGGTGAAAAGCATCGATTACGAAACCCAAAGCATCGAAGTCAACGACCCTAATGAATGTCTCCCAAAACGGTTCTTGCATGATTGGAACCTCACAGGTTCACCTTTCAAGTTAAACCCCATCATTTATGGACCTTACCCTTTTAATCTCACTTTCCTTCGTTGCCCTTCTAATGTGACCAAGTCATCTGAATTCCCATTAGAACCAATTTCTTGCTTGAGCTCCAAATTAGGAGACACAAACTCCTCCTCGTCCTCGGTCATAGTTTCATGGGGACGGCCTATTTTTTCGTCGACGTTTATGTCTGAAGCATGCGAGGTGATTTCCTCGGCTTATGTTCCCCTTCCATGGAGGGAGATGCCCTCGTGGCCCTTTTGGCCTGATCTTAACAATGATGTTGGGTTGGTGTGGACCGAACCCAGATGTGAAAACTGTGCATTTAGTGGCCAAGTTTGTGGGTTCTCTAAGGATAAAAGCCTTCAAGTTGAATGTTTCCCTAGTCCATCCACCAACACAGGTCTTTCAAGAAGTGCCAAATACGGTATAGCTATAGGAGTGGGAATACCTGGAATTTTGTGTGTAATTGGATTTTCTTGCTTTATCTGTGGTAAGCTTAGTATGATTGCACATCGTGGACGGAGCACAGGGCTTCCGGTCACAATTTCCTTGGAGCCCATTCCTTACGTAATGGGGCTTGACGGTGCCACAATTGAAAAGTATCCCAAAACTCTTCTTGGGGAGAGTGGACGTTTATTGAAGCCCCATGACAATATTTGTGCAATATGCCTATCTGAATATGAACCCAAGGAGACGTTGAGGAGCATACCTGAGTGCAACCATTATTTTCATGCAAATTGTATAGATGAGTGGCTCAAAACGAATGAGAGCCAAAATGAAACCTCTGACCACACCGCCTCCGACTCCGACCAATTGGACCAACAGCTCGTGCTCCGAATCGCCGCCACCGCCAAAGACGCAGACGAGGCATTGCAGATGATCGCCGATAACTCTTCCAGAAACGTTGGTGATAATGGCCCTTTAGTTGAGAGATGGAAGTGGTCCAGGCCAAATGCACACGTTTATACACTGCTGATTCAGGGTTTGGCGGCATCGTTGAAGGTTTCGGATGCTCTTCGCGTGATTAAATATATTTGTGAGGTGGGCGTATCTCCTGGTGAAGAGGTCCCTTTTGGGAAGATAGTGAGATGTCCTACTTGTCGGATAGCTGTTGCTGTTGCGCAGCCACAGCAAGGTATTCAGATAGTATCTTGTGCAAAGTGTCGCTACCAATATGAACTTATTTCGGGTGAAATAGTCAGTATTCAATCGGAAGAAATCAGCATGGACATTACAGCATGGGAAAGGGGGTTAAGATTCCTGAAACTGATGAAGCAAAGCGTTCCTTCTGCCGTTCACTCTATTGTGGTGCAGACCCCTTCTGGTATGGCTCGTACTCACAGATTTGCAACTGAAACAGTTGATCTGCCAGCACAAGAAGGTGAAAGGGTAACTGTTGCAGTGGCAGCTCCATCAAATGTATATAGAAAGGTGGGTCCCTTTAAATTCAGTCCTAGGGCTCCGGATTTTTATCCTGGTGAGGCTATGTGCATAACAAACCACAAAGATGGGCGAGAATCACTTCTGTTAAGAGCCCCAAGTAAAGAAGAAAACTCATCATTACTTAAACCCTCCCTCCTCTTTCCACTTCTTGCTTTGTTGGCCACTGGTGATGCTGCCTCTGGACTTATTGACCCCAGCCTGCCTCAATTACTATCAGTTGTTGCAGTTTCATCTCTTGCTGTTGGATCTACATTGAACTCCTTTGTTTTACCCCAGTTTAAGCAGCTTCCGCAAAGGTCAGTAGAAGCAATTTCTATAAAACAACGACTTTTATCTCAGTATGATGTGATTCAGTCTCGCATCAATGACCTAAAACAAGCTGCTGAAAAAGAGATTTGGATGTTAGCTCGAATGTGCCAACTTGAGAATAAAATTTCAGCTGTTGGAGAACCTTCTTATCGGACTCGAAGAAGTAAAGTCAAAAGGGTCCGAGACAGCCTGCAAAACTCCCTCCGGGGACGAATTGAATTGATTGCCAGCTATGCTAGGATTTCATCAATGATTGAAATTGAAGTGGAGATGGAAACTGATGTTCTTGCTGCTGAAAGTGCTAGCAATGTGGATAGTATCACAGAACAGATAGAGCAAATCATGGAGCTTGAAAATTTGGAGGAGAGATGGAAAATGCAAGCAGAAGCCAATGATGAGGCCGAAAGACTTCTTAGTTCCCAACTTAATGAGGATGTTTAA 2547 0.4444 MASLALIYVFYVSVFHLQSTKAKQICNSLSCGDIDIQFPFGLKEANQDRHCSYYPIPSFQLSCNNRSQTILRLPNTGELVVKSIDYETQSIEVNDPNECLPKRFLHDWNLTGSPFKLNPIIYGPYPFNLTFLRCPSNVTKSSEFPLEPISCLSSKLGDTNSSSSSVIVSWGRPIFSSTFMSEACEVISSAYVPLPWREMPSWPFWPDLNNDVGLVWTEPRCENCAFSGQVCGFSKDKSLQVECFPSPSTNTGLSRSAKYGIAIGVGIPGILCVIGFSCFICGKLSMIAHRGRSTGLPVTISLEPIPYVMGLDGATIEKYPKTLLGESGRLLKPHDNICAICLSEYEPKETLRSIPECNHYFHANCIDEWLKTNESQNETSDHTASDSDQLDQQLVLRIAATAKDADEALQMIADNSSRNVGDNGPLVERWKWSRPNAHVYTLLIQGLAASLKVSDALRVIKYICEVGVSPGEEVPFGKIVRCPTCRIAVAVAQPQQGIQIVSCAKCRYQYELISGEIVSIQSEEISMDITAWERGLRFLKLMKQSVPSAVHSIVVQTPSGMARTHRFATETVDLPAQEGERVTVAVAAPSNVYRKVGPFKFSPRAPDFYPGEAMCITNHKDGRESLLLRAPSKEENSSLLKPSLLFPLLALLATGDAASGLIDPSLPQLLSVVAVSSLAVGSTLNSFVLPQFKQLPQRSVEAISIKQRLLSQYDVIQSRINDLKQAAEKEIWMLARMCQLENKISAVGEPSYRTRRSKVKRVRDSLQNSLRGRIELIASYARISSMIEIEVEMETDVLAAESASNVDSITEQIEQIMELENLEERWKMQAEANDEAERLLSSQLNEDV. 849
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g06596 848 CDD RING-H2_EL5-like 337 375 - -
Seca12g06596 848 SMART ring_2 338 485 IPR001841 -
Seca12g06596 848 Coils Coil 706 726 - -
Seca12g06596 848 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 332 418 IPR013083 -
Seca12g06596 848 ProSiteProfiles Zinc finger RING-type profile. 338 369 IPR001841 -
Seca12g06596 848 Coils Coil 809 839 - -
Seca12g06596 848 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 436 470 IPR002885 -
Seca12g06596 848 PANTHER PENTATRICOPEPTIDE REPEAT (PPR) SUPERFAMILY PROTEIN 421 843 - -
Seca12g06596 848 Pfam Wall-associated receptor kinase galacturonan-binding 26 95 IPR025287 GO:0030247
Seca12g06596 848 Pfam RING-like zinc finger 338 366 IPR001841 -
Seca12g06596 848 SUPERFAMILY RING/U-box 332 375 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g06596 Seca-Chr12 158047658 158061512 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g06596 24 375 C3H Transcription Factor Family AT2G46495 34.262 1.96e-47 171
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g06596 - - gmx:100781803 748.429
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g06596 12 158047658 158061512 Seca12g06596 12 158047658 158061512 ECH