Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g06595 ATGGCCACTTTGCCATCTTTCTTTTTCTTCTTCATCCTAGTGGCACACACAATAACAAGTGCTGATGAGTTCAACTGTGCAATCACATCATGCGAAAACGGTGGACTTCCAATTCAATTCCCGTTTTCATTGAGACAAGCGAATCAAGGCTATCTATGTGGTTACCCAGGGTTCGACCTATCATGTACCAATACAAATAATAGCACTACCCTCAGCGAACCATTACTCACTCTTCCAGAATCCGGAGACTTCGTGGTGAAACTAATCTCCCTGGAAGACCAAAAGGTTTGGATTAATGACCCTGACAAGTGCCTCCCAAAACGCATCATGCGTGACCGTGGATTAAATCTCAAAGGCTCCCCCTTCCAATTCAGCGATTATTACACTCTTGTCAATTTCTCCTTCCTCAGTTGCCCCTCCAATTTAACCTCTTCCTCTTTAGTACAACCCATCACTTGTTTAAATTCAAGCTCTTATCACAACAACCTTAGCTATTCGGTGGTAGCTATGGTGTCCGATCCTCCCTTTCCCACGCCATGGACCTCATCGTGCCACTTCATTTCCTCAGCTTCAATTCCGGTTCAATACACTCCTTGGTTGTTCTGGACTGATTATTATGCTGACATACCCTTGAAATGGGACTACCCTGATTGCGGAAATTGTGTAGCACGTGGAGGACGATGTGGCTTCCTTGGAGACCCTGCTTTTGATGTTACTTGTTATGATCTTCCCACTCAAGGTCTTTCAAGGAAAGCCAAGTATGGTGTGAGTTTGGGCCTGGGAATACCTGGGCTCCTGGGTGTAATTGGGCTTACATGGATTTTGTGCTGCAAGAAGAGCGCGCGTGATCTTCCGAGGCAAACGGGTACTGAATTGTCTACCCTAGTTGTGACGCATCCTCCTATTTTTGTCATGGGCCTTGATGGGGCCTCTATAGAAAGATATCCTAAAACCCAGCTTGGTGAAAGTGGACGGTTGCCCAGGCCCAATGATAATATTTGCTCCATTTGTCTTTGTGAATACCAGCCCAAGGAGATGTTGAGGACCATCCCAGAGTGCAATCACTATTTTCATGCGAATTGCATTGATGGATGGCTCAAGATGAATGCCACGTGTCCCTTGTGTCGAAATTTACCAGAGAGATCCACCTCATTTCCTTCCTCTTTGCTTTTATCTCCAACTTCTTAA 1188 0.4545 MATLPSFFFFFILVAHTITSADEFNCAITSCENGGLPIQFPFSLRQANQGYLCGYPGFDLSCTNTNNSTTLSEPLLTLPESGDFVVKLISLEDQKVWINDPDKCLPKRIMRDRGLNLKGSPFQFSDYYTLVNFSFLSCPSNLTSSSLVQPITCLNSSSYHNNLSYSVVAMVSDPPFPTPWTSSCHFISSASIPVQYTPWLFWTDYYADIPLKWDYPDCGNCVARGGRCGFLGDPAFDVTCYDLPTQGLSRKAKYGVSLGLGIPGLLGVIGLTWILCCKKSARDLPRQTGTELSTLVVTHPPIFVMGLDGASIERYPKTQLGESGRLPRPNDNICSICLCEYQPKEMLRTIPECNHYFHANCIDGWLKMNATCPLCRNLPERSTSFPSSLLLSPTS. 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g06595 395 SMART ring_2 334 375 IPR001841 -
Seca12g06595 395 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 304 380 IPR013083 -
Seca12g06595 395 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 7 379 IPR046948 -
Seca12g06595 395 ProSiteProfiles Zinc finger RING-type profile. 334 376 IPR001841 -
Seca12g06595 395 SUPERFAMILY RING/U-box 329 379 - -
Seca12g06595 395 Pfam Wall-associated receptor kinase galacturonan-binding 30 100 IPR025287 GO:0030247
Seca12g06595 395 CDD RING-H2_EL5-like 333 376 - -
Seca12g06595 395 Pfam Ring finger domain 333 376 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g06595 Seca-Chr12 158045836 158047127 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g06595 20 379 C3H Transcription Factor Family AT2G25410 34.400 5.44e-57 189
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g06595 - - lja:Lj4g3v3004070.1 546.969