Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g06587 ATGCAAGAAATTAGAAAAGCAGAGCTTGAACTCCTCCACGATGGTGTTGATATCGGATCATGCTTATCAAATCTCATATTATCAAGCACCACAAACACCCTCGACTCAATTTTCTCTTATTGCTCGCCACCAAACGCCACTAATACCTTGGAGACATTAACCTCTTTTGGTTCCTCGGTGTACCACCGCCAAAGAGACATCCTTCAAAAGTTCTATCACGAAAATCGTTTGAGGTTGATGAGTGAATCTTATGTTCCCAATTGCTTGAAAAATCCAGTCTTTAACAAAAAAGCATACAGGGGAGTGAGACAGAGGCACTGGGGAAAATGGGTAGCAGAGATTAGATTCCCTCAGAACAGAATGAGGGTGTGGTTGGGCACTTATGAGACTCCTGAAGCTGCTGCTTATGCTTATGATTGTGCTGCTTCTAAGCTCCGAGGAGAATACGCGCGTTTGAATTTCCCTGACGTGAAGGACCCATCTAACTTACTCGGATTTGGAGATGATTCTACCAAATTGAATGCTTTGAAGAGCTCCGTGGATGCTAAGATTCAAGCCATATATCAAAAGATGAAGAGAAACAAGTCCAAGAAACGTGCTGCTAAGAAACTCAAGTCTGAGTCATCACCTTGTTCATTGCCGTCAATGTTTTGTGATGGGGCAAACGAGTTTCTGTGGCCTAATGTTTCAGATGATGGAATTTGGAAAGGAGAGTACTCTCCTCCATTAGTCTCTGTTTCAACAGAGTGTACTACAACAATGAGAACAGAGGAGTTAGATTTCCAAGATTGTTCATTGGCAAGGATACCATCCTTTGATCCTGAATTGATTTGGGAAGTTTTATCTAATTAG 852 0.419 MQEIRKAELELLHDGVDIGSCLSNLILSSTTNTLDSIFSYCSPPNATNTLETLTSFGSSVYHRQRDILQKFYHENRLRLMSESYVPNCLKNPVFNKKAYRGVRQRHWGKWVAEIRFPQNRMRVWLGTYETPEAAAYAYDCAASKLRGEYARLNFPDVKDPSNLLGFGDDSTKLNALKSSVDAKIQAIYQKMKRNKSKKRAAKKLKSESSPCSLPSMFCDGANEFLWPNVSDDGIWKGEYSPPLVSVSTECTTTMRTEELDFQDCSLARIPSFDPELIWEVLSN. 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g06587 283 PRINTS Ethylene responsive element binding protein signature 99 110 IPR001471 GO:0003700|GO:0006355
Seca12g06587 283 PRINTS Ethylene responsive element binding protein signature 121 137 IPR001471 GO:0003700|GO:0006355
Seca12g06587 283 ProSiteProfiles AP2/ERF domain profile. 98 155 IPR001471 GO:0003700|GO:0006355
Seca12g06587 283 Gene3D AP2/ERF domain 97 156 IPR036955 GO:0003700|GO:0006355
Seca12g06587 283 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 28 281 - -
Seca12g06587 283 SMART rav1_2 98 161 IPR001471 GO:0003700|GO:0006355
Seca12g06587 283 SUPERFAMILY DNA-binding domain 98 156 IPR016177 GO:0003677
Seca12g06587 283 FunFam Ethylene-responsive transcription factor 2 97 156 - -
Seca12g06587 283 Pfam AP2 domain 99 148 IPR001471 GO:0003700|GO:0006355
Seca12g06587 283 CDD AP2 99 157 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g06587 Seca-Chr12 157939658 157940509 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g06587 17 283 AP2-EREBP Transcription Factor Family AT1G64380 44.308 6.41e-58 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca12g06587 AP2 3.9e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g06587 - - lang:109331119 285.804
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g06587 12 157939658 157940509 Seca12g06587 12 157939658 157940509 ECH