Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g06580 ATGGTTTCAACAGTGCGTGAGAAATTGAAGGGGTTTGTGGGGCACAGATGGGTGGTGTTTGTGTGTGCAATGTGGGATTTGTCATTTGCTGGGACGGCTTACATGTTTGGGAGCATATCGCCGGTCATAAAGAGCAGCATGGGTTTCAACCAGCAACAAGTGGTTTTCTTGAGTGTCGCCAAGGATTTGGGTGATTGCGTTGGGCTTCTGTCTGGGAAACTCAGCGAGGTATGGCCCACTTGGCGTGTTATGCTTGTTGGGGTCATCCAGAATCTTGTCGGTTACTGCCTTGTTTGGCTTGTTGTCACTCACAGCCTTCCTTCTTTGCCTCTTTGGGCGTTATGCATTTTTATCTTTGTGGGACAAAATGGAGCAACATATTACAATACAGTTGCTCTCATTTCCAGCGTGCAAAGTTTCCCCGAAAGCAGAGGGCCTGTGGTGGGGATATTGAAGGGCTTTATTGGGTTAAGCGGTGCAATTTGGGCTCAAATCATAGCTATGATCAATTTCCCAGATCAGGCATCTATAATTTTTATTATAGCAGTTGGACCTGCAATGGTTTCTTTCACCCTCATGTTCATTATAAGACCCGTTCAAAGTCACAAATACTCTAGAGCTTCTGATGAATCAGGCTTTATGTTTATCTACAGCATTTGCCTTCTTTTGGCTGCTTATTTGTTGGGAGTTTTGTTGGTTGAGAATATGTTTGATTTGGAACAGAGCACCATCACATTATTTGCGGTTATTTTGATCATACTCTTATTGCTTCCCATTATAGTTCCTATTCTATTGGTTTTCTTCTCGAAACCCAAAAGTCCTGATGAGGAAACCCTTCTGGAACCACCAATGCCAACAACAACAACAAATTCTATGCATGATGATGATAGTGATGAAACTAGTGTTAGTGATGAACATGTTGAAGATGAGAATCCTCCACAACTAGAGGTGCTTCCGCTATCACAAGGGCCAAGAGACAAATTTCAACTTCAAAGTAAACTTTTCCAAGTTTTGGAGAAATTCAAGCAAGAAAATGGCCCGCATATAGGAGAAGATTTCACCTTAACCCAAGCACTGGTCAACGCTGACTTTTGGATCATGTTTTTATCTCTTGTCTTGAGCTCTGGATCGGGCATGGCAATGATAAACAACATGGGTCAAATTTGTCAATCACTGGGAGATGGCAATGTCAATTTTTATGTATCAGTTATCAGCATATCGAACTTCCTTGGTCGTGTTGGTGGCGGCTACTTCTCAGAGGTTATAATAAGGAAAATTTGCATACCCGAGACTTGTTGCATTGGCAGTGATTCAGTTAGTGATGTGTTTGGGACTGTTGTACTATGCGTTGGGGTTGGTTGGACAGGTTTACGTGTTGGCCATATCAATGGGTTCTGGGTTTGGTGCCCAATGGTCAGTTGCGATAGCTGCAACTTCAGAACTATTTGGGTTGAAGAACTTTGGGACTCTGTACAATTTTCTTACTATGGCTAA 1494 0.4264 MVSTVREKLKGFVGHRWVVFVCAMWDLSFAGTAYMFGSISPVIKSSMGFNQQQVVFLSVAKDLGDCVGLLSGKLSEVWPTWRVMLVGVIQNLVGYCLVWLVVTHSLPSLPLWALCIFIFVGQNGATYYNTVALISSVQSFPESRGPVVGILKGFIGLSGAIWAQIIAMINFPDQASIIFIIAVGPAMVSFTLMFIIRPVQSHKYSRASDESGFMFIYSICLLLAAYLLGVLLVENMFDLEQSTITLFAVILIILLLLPIIVPILLVFFSKPKSPDEETLLEPPMPTTTTNSMHDDDSDETSVSDEHVEDENPPQLEVLPLSQGPRDKFQLQSKLFQVLEKFKQENGPHIGEDFTLTQALVNADFWIMFLSLVLSSGSGMAMINNMGQICQSLGDGNVNFYVSVISISNFLGRVGGGYFSEVIIRKICIPETCCIGSDSVSDVFGTVVLCVGVGWTGLRVGHINGFWVWCPMVSCDSCNFRTIWVEELWDSVQFSYYG. 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g06580 497 Pfam Nodulin-like 16 263 IPR010658 -
Seca12g06580 497 SUPERFAMILY MFS general substrate transporter 15 429 IPR036259 -
Seca12g06580 497 MobiDBLite consensus disorder prediction 292 312 - -
Seca12g06580 497 PANTHER UNCHARACTERIZED NODULIN-LIKE PROTEIN 17 446 - -
Seca12g06580 497 Gene3D MFS general substrate transporter like domains 14 205 IPR036259 -
Seca12g06580 497 MobiDBLite consensus disorder prediction 274 320 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g06580 Seca-Chr12 157903498 157907037 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g06580 1 430 Nodulin-like Gene Family AT3G01930 53.776 7.03e-150 433
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g06580 - - gmx:100784744 607.446