Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g06576 ATGGAGAATGGCTGGAACTGGGATCAGAACACACTCGTCAATGAGCTAATTCAGGGGATGGAAGTAGCAAGAAAGTTGAAGGAAGACTTGAGGACACCATATTCTGCTGACACAAGGGATTTGCAGGTGCAGAGGATATTATCTTCTTATGAAAAGGCTCTACAAATTTTAAGATGGAATGAATCAACTTCCAAGTTGCAGACCATGAGTCCAGCAACAACTTTGTTGCCAGAGTCCCCAATGTCTACCAATGGAAGTCCTCTAAGAGAGGAAGTTGATGGGGCCGTCCAGGATTACCAGGAGGTTAAGCAGGATTCAAAGAAAAGAAAGATTATGCCCAAATGGATGGACCAAATAAGAGTGAGCTTTGAGAGTGGCCTTGAAGGACCACATGAAGATGGCTACAACTGGAGAAAATATGGTCAGAAAGACATCCTCGGTGCCAAATATCCCAGAAGTTACTATAGGTGCACCTTCCGCAACACACAGAACTGCTGGGCCACAAAGCAAGTACAGAGATCAGATGAAGATCCAACAATATTTGACATAACTTACAGAGGAAGGCATACCTGTTCTCAGGGAAATAATGCCGCTCTGCCACATAAGTCACCAGACAAACAAGAGAAACCACGCAGTCTTAATAATGATATTCACCATGCACAGCCATCCCAAGAAAGCCTTACAAAGTTTAGAAACACCTTGACCATCAAAACGGATAACTTGGGAAATGAAGGAATGGCATGTCCTTTCACTTTCCCTTCCACTTCATTTGAATGCATGACACAAGAAAACCACAACTTGATTCCTTTGGCCTTAGAGAATGATCCCTTCTTGGGCAGCCTTTTCCAAACACACTTGTCATCTCCAACAACACCAGAATCAAACTATTTTTCATCTCCAACTTTCCAGATGAATGAGTTTGACGGGTTCTATAACAAGCCGCATTCAGAATCTGATATTACTGAGATCATTTCCACCAACACATCAGCCACCAACTCTCCAATTCCCGATTTCAATTTCTCACTTGATCCTGTGGAAATTGATCCAAACTTCCCTTTCAATACTCCAGGCTTTTTCTGCTGA 1083 0.4275 MENGWNWDQNTLVNELIQGMEVARKLKEDLRTPYSADTRDLQVQRILSSYEKALQILRWNESTSKLQTMSPATTLLPESPMSTNGSPLREEVDGAVQDYQEVKQDSKKRKIMPKWMDQIRVSFESGLEGPHEDGYNWRKYGQKDILGAKYPRSYYRCTFRNTQNCWATKQVQRSDEDPTIFDITYRGRHTCSQGNNAALPHKSPDKQEKPRSLNNDIHHAQPSQESLTKFRNTLTIKTDNLGNEGMACPFTFPSTSFECMTQENHNLIPLALENDPFLGSLFQTHLSSPTTPESNYFSSPTFQMNEFDGFYNKPHSESDITEIISTNTSATNSPIPDFNFSLDPVEIDPNFPFNTPGFFC. 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g06576 360 Pfam WRKY DNA -binding domain 132 191 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca12g06576 360 ProSiteProfiles WRKY domain profile. 126 189 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca12g06576 360 SMART WRKY_cls 131 193 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca12g06576 360 MobiDBLite consensus disorder prediction 192 225 - -
Seca12g06576 360 FunFam WRKY transcription factor 53 117 194 - -
Seca12g06576 360 SUPERFAMILY WRKY DNA-binding domain 130 193 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca12g06576 360 Gene3D WRKY domain 118 194 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca12g06576 360 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 7 292 IPR044810 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g06576 Seca-Chr12 157883878 157885193 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g06576 6 352 WRKY Transcription Factor Family AT4G11070 39.665 7.26e-70 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Seca12g06576 WRKY 1.7e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g06576 - - gmx:100815760 587.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g06576 12 157883878 157885193 Seca12g06576 12 157883878 157885193 ECH
Seca12g06576 12 157883878 157885193 Seca2g05556 2 141929007 141931910 ECH
Seca12g06576 12 157883878 157885193 Seca12g06576 12 157883878 157885193 PCT