Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g06572 ATGTATGTAACAAATCAAAACTTAATTGTGTGCAGGCAAGAAGCAAGGAAAAGTTTACAGGAGGAACGACCAGGAATCACTACCTCCACCCTTAATGCACTTGTTTCCTTGAAATGGAAGGAACTGAGTGAGGAAGAGAGACAATTGTGGAATGGCAGAGCATCTGAAGCAATGGATGCATACAAGAAGGAATTGGAGGAATACAACAAATCCCTCGCTGCAACTGCGAGCCAGGAGCAGAAGAACGAAAAATAG 255 0.4314 MYVTNQNLIVCRQEARKSLQEERPGITTSTLNALVSLKWKELSEEERQLWNGRASEAMDAYKKELEEYNKSLAATASQEQKNEK. 85
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g06572 84 PANTHER HIGH MOBILITY GROUP B PROTEIN 13 9 79 IPR044601 GO:0003677
Seca12g06572 84 Coils Coil 51 82 - -
Seca12g06572 84 SMART hmgende2 3 70 IPR009071 -
Seca12g06572 84 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 13 69 IPR009071 -
Seca12g06572 84 SUPERFAMILY HMG-box 13 75 IPR036910 -
Seca12g06572 84 Gene3D High mobility group box domain 9 84 IPR036910 -
Seca12g06572 84 Pfam HMG (high mobility group) box 12 69 IPR009071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g06572 Seca-Chr12 157853497 157854162 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Seca12g06572 HMG_box 8.1e-10 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g06572 K09273 - gmx:100783033 128.257
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g06572 12 157853497 157854162 Seca12g06572 12 157853497 157854162 ECH