Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g06571 ATGTGTCATCCCACAGTCACATTTTTCATCTCAATCTCTTTCAAATTTAAAAAATTAGACCGTTACACCAACTCTCCTTGTATAAAAAACACCTGGCTCTTTCTCTTCTCCACACTGTACGCTGTCCTGACTTGTTTCATTTCATTTTTCAAACACAACTTTGATTTGATTCTCTCGATGGCTGACACAGTTGCTGAAGTGCCAACAAGGAGGTCAAGGGGCAGAAAGGCCCTGAAAGAGAAAACCCCATCAACAAATGAGGCTAACATTTTGGCTGGGAAGGTTTCTGAGTCCTCTGCCACACCAATTTCACCCCCATCTGAGAAATTATCTCAGCCCAACAAGGGACGAGCTGCTTCTAAGAAACAACAGTCCTCAAAGCAGCAATCTTTCGAGAAAGAGTTGCTTGAGATGCAGGAAAAGCTGCAGCAGTTGCGTCTCGAGAAGGAGAAGACTGAAGAGCTTTTGAAGGTCAAAGACGAGGCCTTGAAGCAGAAGGAAGAAGAGCTCGAAAATCGTGGCCGGGAGCAAGAGAAGCTTCAGATTGAGCTGAAAAAATTGCAGAAGTTGAAGGAGTTCAAACCCACCATGAATTTGCCTATGTTGTTGAAAGACAAGGAACAAGACAAGAAGGAGAAGAAGAAGAATGGGTGCCCTGAGAAAAAAAGGCCTTCTCCCCCTTACATTTTATGGTGCAAAGACCAATGGAATGAGATTAAGAAAACGAATCCAGAGGCAGAATTCAAGGACATTTCTAACATGCTGGGGGCTAAATGGAAGACAGTTAGCGCAGAAGAGAAGAAGCCTTATGAGGAGAAATACCATGCTGAAAAAGAAGCTTATTTGCTGGTAATTGCCAAGGAAAAACGTGAGAGTGAGGCAATGAAGCTCTTGGAAGAGGAGCAGAAGCAGAAGACTGCCATGGAATTGCTTGAACAGTATATCCAATTCAAACAAGACACAGAAAAGGATGGCAAGAAGAAAAAGAAAGAGAAGGATCCTTTGAAACCAAAGCACCCTGTGTCAGCTTATTTCTTGTTCACTAACGAAAGGCGTGCAGCTCTTCTCGCTGAGAACAAGAATTTCTTGGAGGTTCCTAAGATCACAGCTGAAGAGTGGAAAAACATGACAGAAGAACAAAGGAGGCCCTATGAAGAGATGGCAAAGAAGAACAAGGAGAAATATGTCATAGAAATAGAGGCTTATAAGCAGAAAAAGGATGAGGAGGCTGCCAGTCTCATGAAGGAAGAGGAGGAGCATATGAAGCTTCAAAAACAGGAGGCCTTGCAACTGTTGAAGAAAAAGGAGAAAACTGAAAACATTATCAAGATGGCAAAGAAGAACAAGGAGAAATATGTCATAGAAATAGAGGCTTATAAGCAGAAAAAGGATGAGGAGGCTGCCAGTCTCATGAAGGAAGAGGAGGAGCATATGAAGCTTCAAAAACAGGAGGCCTTGCAACTGTTGAAGAAAAAGGAGAAAACTGAAAACATTATCAAGAAAACAAAATTGAATCGTCAGAAGAAGAAACAAAACAAGGAAGATAAGAATTGTGATCCAAACAGGCCTAAGAGGCCTCCATCCTCATTCCTCCTATTTAGGTGA 1605 0.4218 MCHPTVTFFISISFKFKKLDRYTNSPCIKNTWLFLFSTLYAVLTCFISFFKHNFDLILSMADTVAEVPTRRSRGRKALKEKTPSTNEANILAGKVSESSATPISPPSEKLSQPNKGRAASKKQQSSKQQSFEKELLEMQEKLQQLRLEKEKTEELLKVKDEALKQKEEELENRGREQEKLQIELKKLQKLKEFKPTMNLPMLLKDKEQDKKEKKKNGCPEKKRPSPPYILWCKDQWNEIKKTNPEAEFKDISNMLGAKWKTVSAEEKKPYEEKYHAEKEAYLLVIAKEKRESEAMKLLEEEQKQKTAMELLEQYIQFKQDTEKDGKKKKKEKDPLKPKHPVSAYFLFTNERRAALLAENKNFLEVPKITAEEWKNMTEEQRRPYEEMAKKNKEKYVIEIEAYKQKKDEEAASLMKEEEEHMKLQKQEALQLLKKKEKTENIIKMAKKNKEKYVIEIEAYKQKKDEEAASLMKEEEEHMKLQKQEALQLLKKKEKTENIIKKTKLNRQKKKQNKEDKNCDPNRPKRPPSSFLLFR. 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g06571 534 Pfam HMG (high mobility group) box 222 282 IPR009071 -
Seca12g06571 534 Pfam HMG (high mobility group) box 337 403 IPR009071 -
Seca12g06571 534 Coils Coil 121 190 - -
Seca12g06571 534 MobiDBLite consensus disorder prediction 196 226 - -
Seca12g06571 534 PANTHER HIGH MOBILITY GROUP B PROTEIN 13 60 448 IPR044601 GO:0003677
Seca12g06571 534 MobiDBLite consensus disorder prediction 496 522 - -
Seca12g06571 534 Gene3D High mobility group box domain 204 316 IPR036910 -
Seca12g06571 534 Gene3D High mobility group box domain 320 415 IPR036910 -
Seca12g06571 534 Coils Coil 385 512 - -
Seca12g06571 534 CDD HMG-box_AtHMGB6-like_rpt1 222 289 - -
Seca12g06571 534 MobiDBLite consensus disorder prediction 83 132 - -
Seca12g06571 534 SUPERFAMILY HMG-box 324 409 IPR036910 -
Seca12g06571 534 SUPERFAMILY HMG-box 209 283 IPR036910 -
Seca12g06571 534 MobiDBLite consensus disorder prediction 203 221 - -
Seca12g06571 534 SMART hmgende2 336 404 IPR009071 -
Seca12g06571 534 SMART hmgende2 220 290 IPR009071 -
Seca12g06571 534 MobiDBLite consensus disorder prediction 496 534 - -
Seca12g06571 534 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 221 289 IPR009071 -
Seca12g06571 534 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 337 403 IPR009071 -
Seca12g06571 534 MobiDBLite consensus disorder prediction 70 132 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g06571 Seca-Chr12 157850854 157853435 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Seca12g06571 HMG_box 4.8e-14 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g06571 K09273 - gmx:100783033 484.952