Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g06564 ATGACTTTGCCTTCCATCAAGCACACTAGCCACCTCAACCGCACTAAACTGGTCATACGACCTACCGAAGAGTCCCAAATAAAGCATTCCTATCCCAGACTCATTCGAATACATGTCGCTGATGGTGACGCCACGGACTCTTCCAGCGACGAAAAAGAAGAAATAGCCTCTGTGTCTTTCACTCACCGACGAGTTAAAAACTTCATTAACGAAATCACTATTGACTCTGCTGAAAACAGAGGTGATAATGTTGCTAATTCGAGGGAGGGAAGCAGGGGAAAGTCTAGAACCGACGGAGCTCCGGCGAGTCGGCGGCGGCTGGGAGTTTACACCGGGAAGAAATTCAGAGGAGTGAGGCAGAGGCCGTGGGGGAAATGGGCGGCGGAGATAAGAGACCCTCTACGCCGCGTGCGGCTGTGGTTAGGAACCTATAATACCGCCGAAGAAGCTGCCATTGAATATGACAAAGCCGCGATTGAGCTTCGTGGTCCCGACGCGCTCACCAATTTCATTACACCGCCGACGGAGAATAAAAAAACCGGTTACAGTTCCGGCGAAGAATGTGGTAACCGTCACTTGCCTTCTCCCACTTCGGTTCTTCAGTGTTGTTCGTCGTCAGAGGAAGGTGATCGCACGTGTGAATCACGCGAGGAATGTGAATGTGAATATGAACATTCATGCGTGAGGAATTTGTGTGGTAAAGTTTCAGAAGAAAATTTGAAATCGGAGTCAATATTTCCATTTCCAAGCGATGCGTTGTTTGACTTCCAAAGCACGCTAGAGACATTTGAAAACGAGAGCGTCTTCTTCCCGGATGATTTGTGTGGAAGCTTTGTCCCTTCTAGTGAGTGTGACAGTTTCGATTTTGGTTTTAGCAGTGATTTCCAAGATTTTGAGGATTTGTTTGTTTCGGATCCCCTTGTTACTCTTTGA 933 0.478 MTLPSIKHTSHLNRTKLVIRPTEESQIKHSYPRLIRIHVADGDATDSSSDEKEEIASVSFTHRRVKNFINEITIDSAENRGDNVANSREGSRGKSRTDGAPASRRRLGVYTGKKFRGVRQRPWGKWAAEIRDPLRRVRLWLGTYNTAEEAAIEYDKAAIELRGPDALTNFITPPTENKKTGYSSGEECGNRHLPSPTSVLQCCSSSEEGDRTCESREECECEYEHSCVRNLCGKVSEENLKSESIFPFPSDALFDFQSTLETFENESVFFPDDLCGSFVPSSECDSFDFGFSSDFQDFEDLFVSDPLVTL. 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g06564 310 Pfam AP2 domain 114 163 IPR001471 GO:0003700|GO:0006355
Seca12g06564 310 CDD AP2 113 170 IPR001471 GO:0003700|GO:0006355
Seca12g06564 310 MobiDBLite consensus disorder prediction 85 101 - -
Seca12g06564 310 ProSiteProfiles AP2/ERF domain profile. 114 171 IPR001471 GO:0003700|GO:0006355
Seca12g06564 310 MobiDBLite consensus disorder prediction 79 105 - -
Seca12g06564 310 FunFam Ethylene-responsive transcription factor 2 113 172 - -
Seca12g06564 310 SMART rav1_2 114 177 IPR001471 GO:0003700|GO:0006355
Seca12g06564 310 Gene3D AP2/ERF domain 113 172 IPR036955 GO:0003700|GO:0006355
Seca12g06564 310 PRINTS Ethylene responsive element binding protein signature 115 126 IPR001471 GO:0003700|GO:0006355
Seca12g06564 310 PRINTS Ethylene responsive element binding protein signature 137 153 IPR001471 GO:0003700|GO:0006355
Seca12g06564 310 MobiDBLite consensus disorder prediction 173 192 - -
Seca12g06564 310 SUPERFAMILY DNA-binding domain 114 170 IPR016177 GO:0003677
Seca12g06564 310 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 32 214 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g06564 Seca-Chr12 157777316 157778248 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g06564 1 310 AP2-EREBP Transcription Factor Family AT4G23750 37.752 1.61e-47 161
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca12g06564 AP2 7.2e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g06564 - - gmx:100813992 281.182
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g00286 10 2467709 2468644 Seca12g06564 12 157777316 157778248 PCT