Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g06562 ATGGAATTTCTACGCATTTTATCTTCCATTTACCTATTGAGTTTGATTCTCTTACAAGGAAATGCTGAACCTCTTGAAGATAAGAAGGCTTTGCTTGACTTTGTGAACAAGTTCCCTCCTTCTAGGCCTCTAAATTGGAATGAGAGCTCTTCCATGTGTGCTACTTGGACTGGAGTTACTTGCAATGAGGATAAGTCTCGAGTAATAGCCATTCGATTACCAGGGGTTGGATTTCATGGTACCATCCCACCTGATACCATTAGCCGCCTCACAGCGCTGCAAACTTTGAGCCTCAGATCCAACGTCATAACTGGGCACTTCCCTTCTGATTTTTCCAATCTCAAAAACTTGTCTTTTCTTTACCTTCAGTTCAACAATTTGTCAGGTCCTTTGCCGGATTTCTCAGCTTGGAAGAACCTTACTGTTGTCAATTTGTCTAATAACCATTTCAATGGCACCATTCCTGTCTCCCTTTCCAATTTGACTCAGCTTGCTGGTTTGAACCTTGCAAACAACTCTCTTTCTGGTGAAATTCCTGATCTCCAGTTGTCCAGATTGCAGCTGCTGAATTTGTCTCACAACAATTTGCAGGGCACTGTGCCTAAATCTCTCCAGAGGTTTCCTGAGTCTGCATTCTCTGGGAATAACATTTCCCTTGGAATTTCCCCTGCCTTTTCTCCTGTGTCTCCACCGGCTTATGAGCCATCTTCGACTTCTAAAAAACATGGAAGGCTCAACGGAACGGCAATGCTGGGAATTATTGTTGCTGGTAGTGTTCTAGGCCTTGTAGCATTTTGTTATTTGATGTTTCTGTGCTGCTCAAGAAGAAGGGATGGAGATGATGAAGTCTTTAGTGGAAAGTTGCGGAAAGGGGAAATGTCTCCGGAAAAAGCAGTCTCAAGGAACCAGGATGCAAATAATAAATTGGCTTTCTTTGAGGGATGTAATTATGCCTTTGATTTGGAGGATTTGTTGAGGGCTTCTGCTGAGGTACTGGGAAAGGGCACATTTGGGACTGCATATAAGGCAATACTAGAGGATGCAACCACAGTGGTTGTGAAGAGGTTAAAGGAGGTAGCCGTTGGAAAGAAGGATTTTGAGCAACACATGGAGATTGTGGGGAGTCTTAAACATGAGAATGTGGCTGAGCTGAAGGCATATTATTATTCTAAAGATGAGAAACTGATGGTATATGATTACTTCAGTCAGGGGAGCGTGTCTTCTATGCTGCATGGTAAAAGAGGAGAGGACAAGGTGGCTTTAGATTGGGATACTCGGCTGAAAATAGCTTTAGGTGCTGCCAGAGGCATTGCTCGGATCCATGTTGAGAATGGTGGTAAGCTTGTACATGGCAACATCAAGTCCTCAAATATCTTTCTCAATACTAAACAATATGGTTGTGTATCTGACCTTGGCCTGGCAACCATATCAAGCACACTTGCTCTGCCCATCTCACGAGCTGCTGGTTACCGAGCACCTGAAGTTACAGACACAAGGAAAGCAGCACAACCTTCAGATGTTTACAGCTTTGGTGTGGTTTTACTAGAGCTTCTCACTGGGAAATCCCCTATCCACACAACTGGTGGTGATGAGATTATCCACCTAGTGAGGTGGGTTCATTCAGTTGTGAGAGAGGAGTGGACAGCTGAAGTGTTTGATTTAGAGTTGATGAGATTTCCAAACATAGAAGAAGAGATGGTGGAAATGTTACAGATAGCCATGTCATGTGTGGTAAGGATGCCTGATCAGAGACCTAAGATCTCTGAAGTTGTGAAGATGATAGAAAATGTGAGGCAGATTGATACAGGGACCAAGCCATCAGCTGAGAACCAACCAGAACTTAAATTATCTCAACGTGACAATGATAACTCCTCTTCAACTCCATCCCCATTCCCAAAAGGAAGTGAATGA 1911 0.4349 MEFLRILSSIYLLSLILLQGNAEPLEDKKALLDFVNKFPPSRPLNWNESSSMCATWTGVTCNEDKSRVIAIRLPGVGFHGTIPPDTISRLTALQTLSLRSNVITGHFPSDFSNLKNLSFLYLQFNNLSGPLPDFSAWKNLTVVNLSNNHFNGTIPVSLSNLTQLAGLNLANNSLSGEIPDLQLSRLQLLNLSHNNLQGTVPKSLQRFPESAFSGNNISLGISPAFSPVSPPAYEPSSTSKKHGRLNGTAMLGIIVAGSVLGLVAFCYLMFLCCSRRRDGDDEVFSGKLRKGEMSPEKAVSRNQDANNKLAFFEGCNYAFDLEDLLRASAEVLGKGTFGTAYKAILEDATTVVVKRLKEVAVGKKDFEQHMEIVGSLKHENVAELKAYYYSKDEKLMVYDYFSQGSVSSMLHGKRGEDKVALDWDTRLKIALGAARGIARIHVENGGKLVHGNIKSSNIFLNTKQYGCVSDLGLATISSTLALPISRAAGYRAPEVTDTRKAAQPSDVYSFGVVLLELLTGKSPIHTTGGDEIIHLVRWVHSVVREEWTAEVFDLELMRFPNIEEEMVEMLQIAMSCVVRMPDQRPKISEVVKMIENVRQIDTGTKPSAENQPELKLSQRDNDNSSSTPSPFPKGSE. 637
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g06562 636 Gene3D Ribonuclease Inhibitor 26 136 IPR032675 -
Seca12g06562 636 ProSiteProfiles Protein kinase domain profile. 326 597 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g06562 636 Gene3D Phosphorylase Kinase; domain 1 290 400 - -
Seca12g06562 636 FunFam pollen receptor-like kinase 1 295 400 - -
Seca12g06562 636 FunFam Probable inactive receptor kinase RLK902 25 182 - -
Seca12g06562 636 ProSitePatterns Protein kinases ATP-binding region signature. 332 363 IPR017441 GO:0005524
Seca12g06562 636 SUPERFAMILY Protein kinase-like (PK-like) 330 594 IPR011009 -
Seca12g06562 636 PANTHER OS05G0588300 PROTEIN 6 607 - -
Seca12g06562 636 Pfam Protein kinase domain 329 592 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g06562 636 MobiDBLite consensus disorder prediction 600 636 - -
Seca12g06562 636 Pfam Leucine rich repeat 81 127 IPR001611 GO:0005515
Seca12g06562 636 Gene3D Transferase(Phosphotransferase) domain 1 401 622 - -
Seca12g06562 636 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 401 608 - -
Seca12g06562 636 Gene3D Ribonuclease Inhibitor 137 226 IPR032675 -
Seca12g06562 636 SUPERFAMILY L domain-like 37 207 - -
Seca12g06562 636 Pfam Leucine rich repeat N-terminal domain 26 62 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g06562 Seca-Chr12 157757199 157761214 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g06562 1 629 Receptor kinase-like Gene Family AT4G23740 64.907 0.0 807
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Seca12g06562 Pkinase 7.9e-34 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g06562 - - gmx:100804799 1050.04