Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g06552 ATGGGCAACTGCAACAGCGGCGGCGCCGCCACCTATTCCGGCGAGCCTCCCCAGCGCAACGGCCCCACTGTCCTCCCTACCAATTCCAACCCCTCACCCCCTCCCCCACTCCCGAAACCACAACCACCCCTCTCCTCCTCCCTCGGCCGCGTTCTCGGTCGCCCCATGGAGGACGTTCGCTCTATCTACGTCTTCGGCCGCGAGCTTGGTCGAGGCCAATTCGGCGTCACCTACTTGGTCACACACAAAGTGACGAAGGAGCAATTCGCCTGCAAATCCATCGCCACCCGCAAACTCATCAACCGCGACGACATCGACGACGTTCGCCGTGAGGTCCAGATCATGCACCACCTCACCGGCCACCGTAACATTGTGGAGCTCAAGGGTGCCTACGAGGATCGACACTCCGTTAACCTCATCATGGAGCTCTGCGCCGGCGGCGAGCTCTTCGACAGGATCATTGCCAAGGGTCACTACTCCGAGCGCGCCGCCGCTAACTCGTGCCGCCAGATCGTGACGGTGGTTCATAACTGTCACTCCATGGGAGTCATGCATAGGGACTTGAAGCCTGAGAATTTCTTGTTGCTCAGCAATGACGAGAACTCACCTCTTAAGGCCACGGATTTTGGTCTCTCTGTGTTTTTTAAGCCAGGAGATGTGTTTAAAGATCTTGTTGGGAGTGCCTACTATGTTGCTCCTGAGGTGCTGCGTAGAAGTTATGGGCCTGAAGCTGATATTTGGAGTGCTGGGGTTATATTATACATTCTGCTTTCTGGTGTCCCTCCCTTCTGGGCAGAAAATGAACAGGGTATCTTTGATGCTATTCTTCGTGGGCATATTGATTTCGTATCAGATCCTTGGCCTTCCATATCAAGTAGTGCCAAAGATCTGGTCAAGAAGATGCTACGAGCTGACCCTAAAGAACGGCTTTCAGCAGCTGAAGTACTTAATCATCCTTGGATGAGAGTAGATGGAGATGCATCTGACAAGCCTCTTGACATTGCTGTTTTAACCAGAATGAAACAATTCCGGGCAATGAACAAGCTAAAGAAAGTAGCTCTGAAGGTTATTGCTGAAAATCTTTCTGAAGAAGAGATTATTGGTTTGAAGGAAATGTTCAAATCCATGGATACAGATAACAGTGGAACAATCACTTTTGAAGAGTTGAAAGCTGGTCTCCCTAAACTGGGTAGCAAACTATCCGAGTCTGAAGTAAGACAGTTGATGGAAGCGGCAGATGTAGATGGAAACGGAACCATTGATTATATTGAATTTATAACCGCTACCATGCATATGAATAGAGTGGAAAGAGAGGATCACCTATATAAAGCCTTTGAATATTTCGACCAAGATAAGAGCGGGTACATCACAACAGAAGAGTTGAAATTTGCCCTTAAGAAGTATAATATGGGTGATGAGAAGACAATAAAGGAGATCATTGCCGAAGTTGATACAGACAATGATGGAAGAATTAACTATGATGAGTTTGTAGCCATGATGAGGAAAGGCAACCCAGACATAACCCACAGACGTCGCAAATAA 1542 0.4857 MGNCNSGGAATYSGEPPQRNGPTVLPTNSNPSPPPPLPKPQPPLSSSLGRVLGRPMEDVRSIYVFGRELGRGQFGVTYLVTHKVTKEQFACKSIATRKLINRDDIDDVRREVQIMHHLTGHRNIVELKGAYEDRHSVNLIMELCAGGELFDRIIAKGHYSERAAANSCRQIVTVVHNCHSMGVMHRDLKPENFLLLSNDENSPLKATDFGLSVFFKPGDVFKDLVGSAYYVAPEVLRRSYGPEADIWSAGVILYILLSGVPPFWAENEQGIFDAILRGHIDFVSDPWPSISSSAKDLVKKMLRADPKERLSAAEVLNHPWMRVDGDASDKPLDIAVLTRMKQFRAMNKLKKVALKVIAENLSEEEIIGLKEMFKSMDTDNSGTITFEELKAGLPKLGSKLSESEVRQLMEAADVDGNGTIDYIEFITATMHMNRVEREDHLYKAFEYFDQDKSGYITTEELKFALKKYNMGDEKTIKEIIAEVDTDNDGRINYDEFVAMMRKGNPDITHRRRK. 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g06552 513 PANTHER SERINE/THREONINE-PROTEIN KINASE 63 496 - -
Seca12g06552 513 SUPERFAMILY Protein kinase-like (PK-like) 63 322 IPR011009 -
Seca12g06552 513 SMART serkin_6 63 321 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g06552 513 CDD STKc_CAMK 63 320 - -
Seca12g06552 513 MobiDBLite consensus disorder prediction 1 48 - -
Seca12g06552 513 ProSitePatterns EF-hand calcium-binding domain. 377 389 IPR018247 -
Seca12g06552 513 SUPERFAMILY EF-hand 360 501 IPR011992 -
Seca12g06552 513 ProSitePatterns EF-hand calcium-binding domain. 484 496 IPR018247 -
Seca12g06552 513 MobiDBLite consensus disorder prediction 1 26 - -
Seca12g06552 513 Pfam EF-hand domain pair 439 501 IPR002048 GO:0005509
Seca12g06552 513 Pfam EF-hand domain pair 369 429 IPR002048 GO:0005509
Seca12g06552 513 FunFam Calcium-dependent protein kinase 1 329 504 - -
Seca12g06552 513 ProSiteProfiles Protein kinase domain profile. 63 321 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g06552 513 ProSiteProfiles EF-hand calcium-binding domain profile. 436 470 IPR002048 GO:0005509
Seca12g06552 513 Gene3D Transferase(Phosphotransferase) domain 1 149 328 - -
Seca12g06552 513 Pfam Protein kinase domain 63 321 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g06552 513 ProSiteProfiles EF-hand calcium-binding domain profile. 364 399 IPR002048 GO:0005509
Seca12g06552 513 ProSitePatterns Protein kinases ATP-binding region signature. 69 92 IPR017441 GO:0005524
Seca12g06552 513 FunFam Calcium-dependent protein kinase 1 65 148 - -
Seca12g06552 513 FunFam calcium-dependent protein kinase 1 149 328 - -
Seca12g06552 513 Gene3D Phosphorylase Kinase; domain 1 65 148 - -
Seca12g06552 513 ProSitePatterns Serine/Threonine protein kinases active-site signature. 183 195 IPR008271 GO:0004672|GO:0006468
Seca12g06552 513 MobiDBLite consensus disorder prediction 27 43 - -
Seca12g06552 513 ProSitePatterns EF-hand calcium-binding domain. 413 425 IPR018247 -
Seca12g06552 513 SMART efh_1 440 468 IPR002048 GO:0005509
Seca12g06552 513 SMART efh_1 475 503 IPR002048 GO:0005509
Seca12g06552 513 SMART efh_1 368 396 IPR002048 GO:0005509
Seca12g06552 513 SMART efh_1 404 432 IPR002048 GO:0005509
Seca12g06552 513 ProSiteProfiles EF-hand calcium-binding domain profile. 400 435 IPR002048 GO:0005509
Seca12g06552 513 Gene3D - 329 506 - -
Seca12g06552 513 ProSiteProfiles EF-hand calcium-binding domain profile. 471 506 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g06552 Seca-Chr12 157617045 157621989 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g06552 49 513 EF-hand Containing Proteins AT4G23650 81.075 0.0 813
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Seca12g06552 Pkinase 3e-73 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g06552 K13412 - gmx:100777096 919.457