Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g06548 ATGGAACAGAAAAGCCTTCTGATATCGGCACTTAGTGTTGGGGTGGGAGTGGGAGTGGGAATTGGATTGGCTTCTGGACAAAGCGTTGGCAAATGGGGAACTAACACTCTCTCATCAAATGCAATTACTGCTGAGAAGATGGAGCAGGAAATGCTCCGATATGTTGTTGATGGCAGAGAAAGCAACGTCACTTTTGATCAATTCCCTTATTATCTCAGTGAGCAGACTCGAGTTTTGCTGACAAGTGCTGCTTATGTCCATTTAAAACATGCTGATGTTTCTAAATATACACGTAATCTTGCTCCTGCAAGCCGTACTATTCTGCTTTCAGGCCCTGCAGAACTTTACCAACAGATGCTTGCCAAGGCTTTAGCTCATTACTTTGAGGCCAAGTTGCTTCTGTTAGATTTAACTGACTTTTCATTGAAGATTCAGAGTAAATATGGTTCATCCAACAAAGAATCTTCTTTCAAAAGATCCACTTCAGAGTCAACTTTGGAGCGGCTATCTGACCTATTTGGGTCATTTTCAATCTTTTCACAAAGGGAGGAACATAAAGTTGCAGGCAAAATGCACAGGCAAAGCAGTGGAGTGGACCTCCAATCAATGGGGGCTGAAGCATCTTGTAATCCTCCAAAGCTACGTAGGAATGCTTCTTCCTCTTCAAATATTAGCAGCCTTGCTTTGCAAACCAATTCTACAAATTCAGCTCCTCTGAAGCGCACAACCAGCTGGTCTTTTGATGAAAAGCTTCTTATACAGTCTCTTTACATGGTTCTGGTTTTTGTGTCAAAAACCTATCCCATTGTGCTATATCTGCGAGATGTTGATAGATTGTTATACAGATCACAAAGGATATATAACTTGTTTCAGAAAATGTTGAAGAAACTATCTGGACCTATTTTGATTCTTGGTTCAAGAGTTCTAGATTCTTGTAATGACTGGGAAGAGGTGGATGAGAGACTCACTTCACTCTTCCCATACAACATAGAAATCAGGCCCCCAGAAGATGAATCACATCTTGTCAGCTGGAAGTCTCAATTGGAAGAGGACATGAAGATGATACAAGTTCAGGATAACAAGAATCATATCATGGAAGTGCTTGCAGCCAATGATCTTGATTGTGATGACCTGGATTCCATCTGTGTGGCAGACACAATGGTTCTCAGTAACTATATAGAAGAGATTATTGTGTCAGCAATTTCTTATCATTTGATGAAAAACAAAGACCTTGAATACAGAAATGGAAAACTCATTATTTCTTCCAATAGTTTATCCCATGCATTGAATATATTCCACAAGGGGAAATGCAGTGGAAGAGATACATCAAAATTGGAAGATCAACCTGTGAAAACTGAGAAACAGTACTTACATGGTACTAATATTAATATGCTCTTGTTGCTCTCTCTCTCTTGTGTGGACATAAAGATACAAAAGGGGGAAGGAAGTGTTACAAAACCAGCAGTGAAGTCTGAAAATGCTGCCCCTGTAAAAAAGGCTGAAGCAGAAACATCAACTTCAGTGGTAAAGGCAGACGGTGAAAATTCAGTTCCAGCATCCAAAGCTGCTGAAGTTCCTCCTGATAATGAATTTGAGAAGCGAATAAGGCCTGAGGTTATACCAGCAAATGAGATTAATGTCACATTCTCTGACATTGGTGCCTTAGATGAGATCAAAGAATCCCTTCAAGAACTAGTGATGCTTCCTCTTCGAAGGCCAGACCTTTTCACTGGAGGCCTTCTAAAGCCTTGTAGAGGAATATTGCTATTTGGGCCTCCTGGCACTGGTAAGACAATGCTAGCAAAGGCCATTGCAAAGGAAGCTGGAGCAAGTTTCATTAATGTGTCCATGTCTACCATCACTTCTAAATGGTTTGGTGAAGATGAGAAGAATGTTCGCGCTTTATTTACACTTGCAGCCAAGGTCTCACCAACTATTATATTTGTGGATGAGGTTGATAGCATGCTTGGGCAACGGACAAGAGTTGGAGAGCATGAAGCCATGAGGAAAATCAAGAATGAATTTATGTCTCACTGGGATGGACTTATGACAAAACCAGGAGAACGCATCCTTGTTCTTGCTGCAACTAATAGGCCATTTGACCTGGATGAAGCTATTATTAGGCGATTTGAAAGGAGAATTATGGTAGGACTACCATCTGTGGAGAACAGGGAAAAGATTTTGAGGACTCTTTTGGCTAAGGAAAAGGTGGACAAGGAACTTGAGTTTAAGGAACTAGCAATTATGACAGAAGGATATACTGGAAGTGATCTAAAGAACTTGTGCACAACTGCTGCTTATCGACCTGTTAGAGAGTTAATTCAGCAAGAAAGGCTAAAGAATTTGGATAAAAAGCAGAAAGCTGCCAAGGAACAGAATAAAGATGTCCAAGATAGACAAAATGTACAATATACTGTAGGAAATACCCAAGAAGCAGAAGGGGAAGTTCAACAAGAAAGAGTTATTACCCTTAGGCCATTGAATATGCAGGATTTCAAAGAGGCCAAGAATCAGGTTGCTGCAAGCTTTGCAGCTGAAGGGGCTGGAATGAGTGAGCTGAAGCAATGGAATGAGTTGTATGGAGAAGGTGGTTCAAGAAAGAAACAGCAATTGTCTTACTTCCTATGA 2628 0.4072 MEQKSLLISALSVGVGVGVGIGLASGQSVGKWGTNTLSSNAITAEKMEQEMLRYVVDGRESNVTFDQFPYYLSEQTRVLLTSAAYVHLKHADVSKYTRNLAPASRTILLSGPAELYQQMLAKALAHYFEAKLLLLDLTDFSLKIQSKYGSSNKESSFKRSTSESTLERLSDLFGSFSIFSQREEHKVAGKMHRQSSGVDLQSMGAEASCNPPKLRRNASSSSNISSLALQTNSTNSAPLKRTTSWSFDEKLLIQSLYMVLVFVSKTYPIVLYLRDVDRLLYRSQRIYNLFQKMLKKLSGPILILGSRVLDSCNDWEEVDERLTSLFPYNIEIRPPEDESHLVSWKSQLEEDMKMIQVQDNKNHIMEVLAANDLDCDDLDSICVADTMVLSNYIEEIIVSAISYHLMKNKDLEYRNGKLIISSNSLSHALNIFHKGKCSGRDTSKLEDQPVKTEKQYLHGTNINMLLLLSLSCVDIKIQKGEGSVTKPAVKSENAAPVKKAEAETSTSVVKADGENSVPASKAAEVPPDNEFEKRIRPEVIPANEINVTFSDIGALDEIKESLQELVMLPLRRPDLFTGGLLKPCRGILLFGPPGTGKTMLAKAIAKEAGASFINVSMSTITSKWFGEDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMSHWDGLMTKPGERILVLAATNRPFDLDEAIIRRFERRIMVGLPSVENREKILRTLLAKEKVDKELEFKELAIMTEGYTGSDLKNLCTTAAYRPVRELIQQERLKNLDKKQKAAKEQNKDVQDRQNVQYTVGNTQEAEGEVQQERVITLRPLNMQDFKEAKNQVAASFAAEGAGMSELKQWNELYGEGGSRKKQQLSYFL. 876
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g06548 875 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 45 874 - -
Seca12g06548 875 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 100 378 IPR027417 -
Seca12g06548 875 Gene3D - 546 718 IPR027417 -
Seca12g06548 875 Gene3D - 47 356 IPR027417 -
Seca12g06548 875 FunFam p-loop nucleoside triphosphate hydrolase superfamily protein 546 721 - -
Seca12g06548 875 Pfam AAA+ lid domain 742 782 IPR041569 -
Seca12g06548 875 SMART AAA_5 583 720 IPR003593 GO:0016887
Seca12g06548 875 Gene3D - 719 798 - -
Seca12g06548 875 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 546 784 IPR027417 -
Seca12g06548 875 Coils Coil 779 799 - -
Seca12g06548 875 MobiDBLite consensus disorder prediction 485 526 - -
Seca12g06548 875 ProSitePatterns AAA-protein family signature. 690 709 IPR003960 GO:0005524|GO:0016887
Seca12g06548 875 Pfam ATPase family associated with various cellular activities (AAA) 587 717 IPR003959 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g06548 Seca-Chr12 157585956 157591939 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g06548 547 779 Calmodulin-binding Proteins AT3G56690 38.559 5.79e-43 167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g06548 - - gmx:100807464 1424.07