Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g06537 ATGGATGAGAACTTGCTCGACGATATTATCAGGAGGCTTGTATCGGCGAAGAACGGTAGAACAACGAAGCAGGTGCAGCTTACGGAGTCTGAAATCCGACAGCTCTGTGGTTCCTCCAAGGAGATCTTTCTCAGTCAGCCTAATCTTCTCGAACTCGAAGCTCCTATCAAGATTTGTGGTGATGTCCATGGCCAATTTTCAGATCTTCTGAGGTTATTTGAATATGGGGGATTCCCACCTGAAGCAAATTATTTATTTCTTGGAGATTATGTTGATCGTGGTAAGCAGAGCATAGAGACAATATGCTTACTCCTTGCATACAAGATCAAATACAAGGAGAATTTCTTTCTTCTCAGGGGAAATCATGAATGTGCCTCCATCAATCGTATATATGGTTTCTATGATGAGTGCAAGAGGAGGTTTAATGTTCGCCTCTGGAAGACATTTACTGACTGTTTTAATTGTCTCCCTGTTGCTGCTCTAATAGATGAGAAGATCCTTTGCATGCATGGTGGACTATCGCCTGAACTTAAAAACTTAGATCAGATAAGGGGTATTGCTCGCCCTATTGATGTGCCAGATCATGGCCTTCTCTGTGACCTTCTATGGGCTGATCCTGATAAAGATCTTGATGGATGGGGAGAAAATGATCGAGGTGTTTCGTTTACCTTTGGGGCTGACAAGGTTGTTGAATTTCTTGAACAGCATGATCTCGATCTCATCTGTAGAGCTCACCAGGTTGTAGAAGATGGATATGAGTTTTTTGCCAAACGTCAGCTCGTGACTATATTCTCTGCACCAAATTACTGTGGTGAATTTGATAATGCTGGTGCTATGATGAGCGTGGATGACACCTTAACATGCTCTTTCCAGATACTTAAGTCTTCTGATAAGAAAGGGAAAGGTGGATTTGGCAACAACACATCAAGACCAGGAACTCCACCTCATAAGGTAAAAAAATAG 963 0.4226 MDENLLDDIIRRLVSAKNGRTTKQVQLTESEIRQLCGSSKEIFLSQPNLLELEAPIKICGDVHGQFSDLLRLFEYGGFPPEANYLFLGDYVDRGKQSIETICLLLAYKIKYKENFFLLRGNHECASINRIYGFYDECKRRFNVRLWKTFTDCFNCLPVAALIDEKILCMHGGLSPELKNLDQIRGIARPIDVPDHGLLCDLLWADPDKDLDGWGENDRGVSFTFGADKVVEFLEQHDLDLICRAHQVVEDGYEFFAKRQLVTIFSAPNYCGEFDNAGAMMSVDDTLTCSFQILKSSDKKGKGGFGNNTSRPGTPPHKVKK. 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g06537 320 PRINTS Serine/threonine phosphatase family signature 84 111 IPR006186 GO:0016787
Seca12g06537 320 PRINTS Serine/threonine phosphatase family signature 117 141 IPR006186 GO:0016787
Seca12g06537 320 PRINTS Serine/threonine phosphatase family signature 237 257 IPR006186 GO:0016787
Seca12g06537 320 PRINTS Serine/threonine phosphatase family signature 259 275 IPR006186 GO:0016787
Seca12g06537 320 PRINTS Serine/threonine phosphatase family signature 151 177 IPR006186 GO:0016787
Seca12g06537 320 PRINTS Serine/threonine phosphatase family signature 180 207 IPR006186 GO:0016787
Seca12g06537 320 PRINTS Serine/threonine phosphatase family signature 55 82 IPR006186 GO:0016787
Seca12g06537 320 FunFam Serine/threonine-protein phosphatase 1 303 - -
Seca12g06537 320 PANTHER SERINE/THREONINE PROTEIN PHOSPHATASE 10 299 - -
Seca12g06537 320 MobiDBLite consensus disorder prediction 298 320 - -
Seca12g06537 320 ProSitePatterns Serine/threonine specific protein phosphatases signature. 118 123 IPR006186 GO:0016787
Seca12g06537 320 Gene3D - 1 305 IPR029052 -
Seca12g06537 320 Pfam Calcineurin-like phosphoesterase 55 247 IPR004843 GO:0016787
Seca12g06537 320 Pfam Serine-threonine protein phosphatase N-terminal domain 6 53 IPR031675 -
Seca12g06537 320 SMART pp2a_7 27 297 IPR006186 GO:0016787
Seca12g06537 320 SUPERFAMILY Metallo-dependent phosphatases 22 297 IPR029052 -
Seca12g06537 320 CDD MPP_PP1_PPKL 6 294 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g06537 Seca-Chr12 157433043 157437507 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g06537 56 240 Calmodulin-binding Proteins AT5G63870 30.455 2.10e-26 104
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g06537 12 157433043 157437507 Seca12g06537 12 157433043 157437507 ECH