Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g06535 ATGGATGAGCTTGCGTGCTTGATGGATTGGGATTTGGAAGCTATTGTGAGAGGATGCAACGGTGAAGCACCAGCTGCCACCATCATGGACGACCCACATCTCAATTTTTCTCATTTCTTCTCTGAACAAGATGAGCTACTTGGCAGTTTTCCTCAATTCTCAGAAACCACTAATGTCTTTGATGAATTGGAAGAGCTCTACAAACCTTTCTACCCAGTTTTGCACCCTCTTTCATCACAGAGCATAGTCACAAGTTCCTTACCTATCCCCAAAGAACCTGAAGAAGCCAAAGTACTAAAAGCATCAGAGAAAGTAGCTTCACAAGATTTGCAAAAAGCATCAGACAAAGTAGCTTCACAAGATTTGCAAGTTCCCACAGTATCTAAATATAAAAGAAGCAAGAAGAACCAGAACAAGAGTGTGGTCATGAAACAGGTGACAGCAGGGGATGGTGTGTGTGATGCATGGGCATGGCGTAAATATGGACAGAAACCAATAAAGGGTTCACCTTATCCTCGGAGCTACTATAGATGCAGCAGTTCCAAAGGTTGCTTGGCAAGGAAACAAGTTGAAAGGAGCAATTTGGATCCAGGAGTTTTTTTGGTTACATACACTGCAGAACACAATCATCCCCAACCAACTCGCAGAAATTCATTAGCAGGGAGCACCAGGAATAAGAACAATTCCATGGTTACACCTCCAATTCCAAGCAGTGGTGACCAACAACACACCTGTTCTTCAAATTCCTCATCAACAGAAATTGATCACTCTCCAAGGACACCTTTGGTGGTGGTGGCCTCATCCAACATTGAAGATGAGCTTGTGACAAGTGTGCAACAAAGTAATAAAGGCTTGGAGAAAGGGGAAGATTTTCTTGAGTGGTTGGATGATGCTGAAGGTGGTGATGGTTGGATTCCAAGCATAGAGTTAGAAGAACTCATAGGACTTAAGTTCCAACAATTTGTTGATGGCTGCGGTTTCACGGATGGTTTTGCTGACACTTAG 1005 0.4318 MDELACLMDWDLEAIVRGCNGEAPAATIMDDPHLNFSHFFSEQDELLGSFPQFSETTNVFDELEELYKPFYPVLHPLSSQSIVTSSLPIPKEPEEAKVLKASEKVASQDLQKASDKVASQDLQVPTVSKYKRSKKNQNKSVVMKQVTAGDGVCDAWAWRKYGQKPIKGSPYPRSYYRCSSSKGCLARKQVERSNLDPGVFLVTYTAEHNHPQPTRRNSLAGSTRNKNNSMVTPPIPSSGDQQHTCSSNSSSTEIDHSPRTPLVVVASSNIEDELVTSVQQSNKGLEKGEDFLEWLDDAEGGDGWIPSIELEELIGLKFQQFVDGCGFTDGFADT. 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g06535 334 MobiDBLite consensus disorder prediction 207 257 - -
Seca12g06535 334 MobiDBLite consensus disorder prediction 206 259 - -
Seca12g06535 334 ProSiteProfiles WRKY domain profile. 147 213 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca12g06535 334 SUPERFAMILY WRKY DNA-binding domain 152 213 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca12g06535 334 SMART WRKY_cls 152 212 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca12g06535 334 Gene3D WRKY domain 135 214 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca12g06535 334 FunFam WRKY transcription factor 22 134 206 - -
Seca12g06535 334 Pfam WRKY DNA -binding domain 154 211 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca12g06535 334 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 8 272 IPR044810 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g06535 Seca-Chr12 157415276 157416884 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g06535 1 324 WRKY Transcription Factor Family AT4G23550 43.731 1.54e-55 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Seca12g06535 WRKY 7.1e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g06535 K13426 K13425 gmx:102663255 365.155