Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g06529 ATGAATTTGCAGAACGAGGTGGGTTTGTTGAGTAAAATTCAGCATCCAAATGTAATTTCTCTACTGGGTTGTAGCAGTAATGAGGATACGAGGTTTATTGTCTATGAGTTGATGCAAAATGGATCATTGGAAACTCAGTTACATGGACCTTCTCGTGGCTCAGCATTGACTTGGCACATGAGGATGAAGATTGCTCTTGATACAGCAAGGTGA 213 0.4085 MNLQNEVGLLSKIQHPNVISLLGCSSNEDTRFIVYELMQNGSLETQLHGPSRGSALTWHMRMKIALDTAR. 71
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g06529 70 Gene3D Transferase(Phosphotransferase) domain 1 2 70 - -
Seca12g06529 70 ProSiteProfiles Protein kinase domain profile. 1 70 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g06529 70 PANTHER OS01G0253100 PROTEIN 2 70 - -
Seca12g06529 70 Pfam Protein tyrosine and serine/threonine kinase 2 69 IPR001245 GO:0004672|GO:0006468
Seca12g06529 70 SUPERFAMILY Protein kinase-like (PK-like) 3 70 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g06529 Seca-Chr12 157349732 157350251 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g06529 3 70 Receptor kinase-like Gene Family AT1G80640 63.235 1.18e-24 92.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-X Seca12g06529 PK_Tyr_Ser-Thr 2.3e-10 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g06529 - - gmx:100812044 125.561