Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g06524 ATGGGTCACCATTCTTGCTGCAATCAACAGAAGGTTAAGAGAGGGCTCTGGTCTCCTGAGGAAGATGAGAAACTCATTCGTTACATTACCACTCATGGCTATGGCTGTTGGAGTGAAGTTCCAGAGAAAGCTGGGCTTCAAAGGTGTGGGAAGAGTTGTCGCTTGAGATGGATTAATTATCTGAGACCTGATATTCGAAGAGGAAGGTTTACACCTGACGAGGAGAAATTAATTATAAGCCTTCACGGGGTCGTAGGCAACAGATGGGCACACATTGCAAGCCACTTGCCTGGTAGAACTGACAATGAAATAAAGAACTATTGGAATTCTTGGATCAAAAAGAAAATAAGAAAGCCTTCAGGATCTTCAACCAGCAGCATTACACAGAATGTGGATCATTCCCAGTTCAACAACAGTTATAACTCTAACAAACTAGATATTCACTTTTCAAACCAAGAGATTAATCTAACAGCAAAGCCACCATCAGTTCAAGAAGCCTTATTTTCTTCCACATGCCCCTTATTTATGTTTGAGCCTAGTTCACTAGATGGAACAGCAACAGACATCAATAATGTAAGATCAGCAGAACACTTCCAAGTAGAAGATGCTGTTGGTTTGAGCTCTGAAACATGGAACTTTAGCCACCATCAATTCCAGTCACTTCCTCCTCCATCAACAACTTTCACAGTGGCTGTAGGCTTGGACACCACCAATTATCTTCCACCATTGATAGACAATAATAATGTGGAAAATATGGTGCCAATTGAGGCACATTCTTGTAGCATAGAGGAGGAAGGGGATATAGCACTTTTGCAGAGGCAAGATGATCATCAGTTGAATGAATGGGTAGAAACTGATCAACAACAATGTCCTAACTTTCTTTTCTGGGACAGTGTTGAAAGACAACTTGGTGGGGAAGAATTAGCACCAAATTCATCAAATATGGGAACAATAAACACACTTTCTCCTTTTCCTTCTTCTTTGTGA 987 0.4093 MGHHSCCNQQKVKRGLWSPEEDEKLIRYITTHGYGCWSEVPEKAGLQRCGKSCRLRWINYLRPDIRRGRFTPDEEKLIISLHGVVGNRWAHIASHLPGRTDNEIKNYWNSWIKKKIRKPSGSSTSSITQNVDHSQFNNSYNSNKLDIHFSNQEINLTAKPPSVQEALFSSTCPLFMFEPSSLDGTATDINNVRSAEHFQVEDAVGLSSETWNFSHHQFQSLPPPSTTFTVAVGLDTTNYLPPLIDNNNVENMVPIEAHSCSIEEEGDIALLQRQDDHQLNEWVETDQQQCPNFLFWDSVERQLGGEELAPNSSNMGTINTLSPFPSSL. 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g06524 328 CDD SANT 69 112 IPR001005 -
Seca12g06524 328 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Seca12g06524 328 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Seca12g06524 328 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Seca12g06524 328 SMART sant 66 114 IPR001005 -
Seca12g06524 328 SMART sant 13 63 IPR001005 -
Seca12g06524 328 PANTHER MYB DOMAIN PROTEIN 55 1 242 - -
Seca12g06524 328 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Seca12g06524 328 CDD SANT 17 61 IPR001005 -
Seca12g06524 328 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Seca12g06524 328 Gene3D - 6 66 - -
Seca12g06524 328 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Seca12g06524 328 MobiDBLite consensus disorder prediction 309 328 - -
Seca12g06524 328 FunFam MYB transcription factor 6 66 - -
Seca12g06524 328 FunFam Transcription factor MYB26 68 138 - -
Seca12g06524 328 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Seca12g06524 328 Gene3D - 68 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g06524 Seca-Chr12 157279770 157282371 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g06524 1 316 MYB Transcription Factor Family AT1G63910 47.368 4.42e-96 287
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca12g06524 Myb_DNA-binding 5e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g06524 K09422 K02947 gmx:100803556 481.87