Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g06523 ATGGACACTGATCTTCATCATATAATTCATTCTGACCAACCTCTTAGAGAAGAACATTGTCAGTACTTCTTATATCAGCTGTTACGGGGCCTGAAATATGTGCACTCAGCTAATGTTTTGCACCGTGATCTTAAGCCCAGTAATTTGCTAATGAATGCGAACTGTAACCTTAAAATTGGGGACTTTGGTTTGGCAAGGACAACATCTGAAACAGATTTCATGACAGAATATGTTGTCACAAGATGGTACCGAGCCCCAGAATTGCTCCTTAATTGTTCTGAGTACACTTCTGCAATTGATGTTTGGTCTGTTGGTTGCATATTTGGTGAAATTATGACCAGAGAACCATTGTTTCCTGGGAAAGACTATGTTCATCAACTAAGGCTTATAACAGAGTTAATAGGTTCACCTGACGATGCCAGCCTTGGATTTCTCCGAAGTGATAATGCCAGAAGATACATTAGACAGTTTCAACAATACAGGAAGCAGAAATTCTCAGCTAGATTCCCTAACATGATGCCTGAGGCATTGGATCTGTTAGAAAAGATGCTTATCTTTGATCCAAACAAACGTATCACAGGTATTCTTGTAGAATTTGAGTTTGTTGGGCAGACCTATATTTCTTGCTTGCTAAACACAATTTCTCTCCTTTGGTTCATTTCATATTTATTTGCAGTTGATGAGGCACTATGTCACCCATATCTTTCATCACTTCATAACATTGATGATGAGCCAGTCTGTCCAAGGCCATTCAGTTTTGATTTTGATCAGCCAACCTGCACTGAAGAGCACATCAAGGAGCTTATCTGGAAGGAATCAGTGAAGTTCAATCCTGATCCACCCTGTCAGTAA 852 0.3967 MDTDLHHIIHSDQPLREEHCQYFLYQLLRGLKYVHSANVLHRDLKPSNLLMNANCNLKIGDFGLARTTSETDFMTEYVVTRWYRAPELLLNCSEYTSAIDVWSVGCIFGEIMTREPLFPGKDYVHQLRLITELIGSPDDASLGFLRSDNARRYIRQFQQYRKQKFSARFPNMMPEALDLLEKMLIFDPNKRITGILVEFEFVGQTYISCLLNTISLLWFISYLFAVDEALCHPYLSSLHNIDDEPVCPRPFSFDFDQPTCTEEHIKELIWKESVKFNPDPPCQ. 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g06523 283 ProSitePatterns Serine/Threonine protein kinases active-site signature. 39 51 IPR008271 GO:0004672|GO:0006468
Seca12g06523 283 Gene3D Phosphorylase Kinase; domain 1 247 272 - -
Seca12g06523 283 Gene3D Transferase(Phosphotransferase) domain 1 1 193 - -
Seca12g06523 283 FunFam Mitogen-activated protein kinase 1 213 - -
Seca12g06523 283 SMART serkin_6 1 202 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g06523 283 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 1 236 - -
Seca12g06523 283 Pfam Protein kinase domain 3 193 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g06523 283 SUPERFAMILY Protein kinase-like (PK-like) 1 193 IPR011009 -
Seca12g06523 283 ProSiteProfiles Protein kinase domain profile. 1 202 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g06523 283 Gene3D Transferase(Phosphotransferase) domain 1 225 246 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g06523 Seca-Chr12 157269587 157272439 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g06523 1 278 MAP Kinase Gene Family AT4G01370 72.662 5.39e-151 425
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_MAPK Seca12g06523 Pkinase 2.4e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g06523 - K20600 tpra:123916746 493.426