Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g06520 ATGAATGAGTCTTCTAACAATTTCTATCACCAACATGAGATTTCTGAGACAAGTGGTGAGAATCTAATAGTCGGTGCTGCCCATGATTCTGTTTCTGCCCCGTGGCAGGAGAACAGGTTGCTAGTGGATGATTCTTCTTTGAGGTGTGTGTTTCCTTGTGAAGGTAATGAAAGACCAAGTCAAGGCCTTTCACTCTCTCTCAGTTCAACCAATCCTTCAACTATTAGGTTGCAGTCTTTTGAACTAAGACACACTGCTGACCATCATGTTCATCAACATCAAAATGTTTACCAAGGACATTTCGTGCTCAAGAACTCCAAGTTCTTGGTTCCTGCACAGGACCTTCTGAACGAGTTTTGTAGTCTAGGGACAAAGCAAAATGATGTACCACCGAAGCAGTGGGAAGAGGATAACGGTAGCGGTAATTCCTCCAAGAAGCATTCACTTAGCTCTCTAGAGTTGATGGAATTGCAAAAGAGGAAGACAAAGCTGCTTTCGATGCTAGAAGAGGTTGAGAGAAGATACAGGCACTACTGCAATCAGATGAAGACTGTGGTGTCCTCCTTTGAAGCAGTGGCTGGTAATGGTGCTGCCACAGTGTACTCATGTTTAGCTCTGAAAGCCATGTCAAAACATTTCAGGTGTTTGAAAGATGGGATTTTGGATCAGATTCAGGCGACTAGGAAAGCCATGGGAGAGAAAGACCCAATTGCACCAGGAACAACCAGGGGAGAAACACCGAGGCTTAGAGTCATTGACCAGGCACTGAGACAACAGAGGGCATTCCAGCAACTCAACATGATGGAAACCCATCCATGGAGACCTCAACGCGGCCTTCCCGAACGATCCGTTTCCGTTCTTCGAGCTTGGCTTTTTGAGCACTTTCTCCATCCGTACCCAAGCGATGTTGATAAGCATATTTTAGCCCGCCAAACGGGTCTCTCCCGAAGCCAGGTTTCAAATTGGTTTATTAATGCAAGGGTGAGGCTATGGAAGCCAATGGTGGAACAAATGTACTTGGAAGAAGAGAAGGAAGAAAACAACAACATTTCATCCTCCGATAATGGAGGCAACAATATTCATGAAGATGATGACATATCTCCTTCAATGAGATCTGAGGATCAGAAGCCAACACAATCTCGACTCCTTCGTATTGACTCAGAGTGTGTGTCGTCGATAGTCAATACTAACAACTCAGATCATAAAAACGACCCAAAGAACATCAAAACGATGCACATGAATCAGCAGGAAGACACATTTGGATCTGTTGATATTGATTTTTCATGTTATCCGCAGCAGTCTTCTTCCGGCATGGTTTCTTTTGCAAGTAATGATCAAAACGCCAATAATCAGAGTTTCCACAGTGGCGGCGGAGTGTCATTGACGCTAGGGTTACAGCAACACGGTGGAAGCGGTGTGAGCATAGCGTTTCCCTCAGCAACAGAGTTTTACACAAGCAGGGATCAGCACATGGAAGAGTGTCAACCAATTCATCACTACTCTCTTTTGGATGGCGAAGGACAGAATATGCCGTACAGGAATCTGATGGGGACGCAGTTGCTTCATGACTTGGCTTGA 1578 0.4499 MNESSNNFYHQHEISETSGENLIVGAAHDSVSAPWQENRLLVDDSSLRCVFPCEGNERPSQGLSLSLSSTNPSTIRLQSFELRHTADHHVHQHQNVYQGHFVLKNSKFLVPAQDLLNEFCSLGTKQNDVPPKQWEEDNGSGNSSKKHSLSSLELMELQKRKTKLLSMLEEVERRYRHYCNQMKTVVSSFEAVAGNGAATVYSCLALKAMSKHFRCLKDGILDQIQATRKAMGEKDPIAPGTTRGETPRLRVIDQALRQQRAFQQLNMMETHPWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKPMVEQMYLEEEKEENNNISSSDNGGNNIHEDDDISPSMRSEDQKPTQSRLLRIDSECVSSIVNTNNSDHKNDPKNIKTMHMNQQEDTFGSVDIDFSCYPQQSSSGMVSFASNDQNANNQSFHSGGGVSLTLGLQQHGGSGVSIAFPSATEFYTSRDQHMEECQPIHHYSLLDGEGQNMPYRNLMGTQLLHDLA. 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g06520 525 Pfam Homeobox KN domain 290 329 IPR008422 GO:0003677|GO:0006355
Seca12g06520 525 ProSiteProfiles 'Homeobox' domain profile. 270 333 IPR001356 GO:0003677
Seca12g06520 525 MobiDBLite consensus disorder prediction 342 382 - -
Seca12g06520 525 MobiDBLite consensus disorder prediction 358 381 - -
Seca12g06520 525 MobiDBLite consensus disorder prediction 127 152 - -
Seca12g06520 525 SMART prehox3 97 222 IPR006563 -
Seca12g06520 525 SUPERFAMILY Homeodomain-like 274 339 IPR009057 -
Seca12g06520 525 SMART HOX_1 273 337 IPR001356 GO:0003677
Seca12g06520 525 FunFam BEL1-like homeodomain protein 4 276 338 - -
Seca12g06520 525 Pfam Associated with HOX 102 220 IPR006563 -
Seca12g06520 525 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 68 355 - -
Seca12g06520 525 Coils Coil 154 174 - -
Seca12g06520 525 CDD homeodomain 273 334 IPR001356 GO:0003677
Seca12g06520 525 Gene3D - 276 338 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g06520 Seca-Chr12 157216217 157218741 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g06520 7 525 Homeobox Transcription Factor Family AT5G41410 45.134 4.84e-135 403
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Seca12g06520 POX 4.6e-45 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g06520 - - gmx:100792789 663.685
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g06519 12 157201125 157203963 Seca12g06520 12 157216217 157218741 PCT