Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g06519 ATGAATGAGTCTTCTACCAATTTCTATCGTCACCATGAGATTTCCGAAACAAGTGGTGAGAATCTAATAGTCGGTGCTGCCCATGATTCTGTTTCTGCCCCGTGGCAGGAGAACAGGTTGCTAGTGGATGATTCTTCTTTGAGGTGTGTGTTTCCTTGTGAAGGTAATGAAAGACCAAGTCAAGGCCTTTCACTCTCTCTCAGTTCAACAAACCCTTCAAGTATTGGGTTACAGTCTTTTGAACTAAGACACACTACTGACCATCATGTTCATCAACATCAAAATGTTTATCAAGGACATTTCGTGCTCAAGAACTCCAAGTTCTTGGTTCCTGCACAGGATCTGCTAAACGAGTTTTGCAGTCTAGGGACAAAGCAAAATGATGTACCAAAGCAAAAGTCTCAGAAAAACAAACAGTGGGAAGAGGACAATTCGTCAAGGAAGCATTGTCTTAGCTCTCTAGAGTTTGTAGAATTGCAGAAGAAAAAGACAAAGCTGCTTTCAATGCTGGAAGAGGTATATATGTTTTTTTTTCTCTTCATTAAAGTTGAGAGAAGATACAGGCACTACTGTAACCAGATGAAGACGGTGGTGTCCTCTTTTGAAGCAGTAGCTGGTAATGGTGCTGCCACGGTGTACTCAGCTTTAGCTCTGAAAGCCATGTCAAAACATTTCAGGTGTTTAAAAGATGGGATTTTGGATCAGATTCAGGCAACAAGGAAAGCCATGGGAGAGAAAGACCCAATTGCACCAGGCACAACAAGGGGAGAAACACCAAGGCTTAAAGTCATTGACCAAGCACTGAGACAACAGAGAGCTTTCCAGCAACTCAACATGATGGAAACCCATCCATGGAGACCTCAACGCGGCCTTCCCGAACGATCCGTTTCCGTTCTCCGGGCTTGGCTATTTGAGCACTTTCTCCATCCGTACCCAAGCGATGTTGATAAGCATATTTTAGCCCGCCAAACGGGTCTCTCCCGAAGCCAGGTTTCAAATTGGTTTATTAATGCAAGGGTGAGGCTATGGAAGCCAATGGTGGAACAAATGTACTTGGAAGAAGAGAAGGAAGAAAACAACAACATTTCATCCTCCGATAATGGAGGCAACAATATTCATGAAGATGATGACATATCTCCTTCAATGAGATCTGAGGATCAGAAGCCAACACAATCTCGACTCCTTCGTATTGACTCAGAGTGTGTGTCGTCGATAGTCAATACTAACAACTCAGATCATAAAAACGACCCAAAGAACATCAAAACGATGCACATGAATCAGCAGGAAGACACATTTGGATCTGTTGATATTGATTTTTCATGTTATCCGCAGCAGTCTTCTTCCGGCATGGTTTCTTTTGCAAGTAATGATCAAAACGCCAATAATCAGAGTTTCCACAGTGGCGGCGGAGTGTCATTGACGCTAGGGTTACAGCAACACGGTGGAAGCGGTGTGAGCATAGCGTTTCCCTCAGCAACAGAGTTTTACACAAGCAGGGATCAGCACATGGAAGAGTGTCAACCAATTCATCACTACTCTCTTTTGGATGGCGAAGGACAGAATATGCCGTACAGGAATCTGATGGGGACGCAGTTGCTTCATGACTTGGCTTGA 1614 0.438 MNESSTNFYRHHEISETSGENLIVGAAHDSVSAPWQENRLLVDDSSLRCVFPCEGNERPSQGLSLSLSSTNPSSIGLQSFELRHTTDHHVHQHQNVYQGHFVLKNSKFLVPAQDLLNEFCSLGTKQNDVPKQKSQKNKQWEEDNSSRKHCLSSLEFVELQKKKTKLLSMLEEVYMFFFLFIKVERRYRHYCNQMKTVVSSFEAVAGNGAATVYSALALKAMSKHFRCLKDGILDQIQATRKAMGEKDPIAPGTTRGETPRLKVIDQALRQQRAFQQLNMMETHPWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKPMVEQMYLEEEKEENNNISSSDNGGNNIHEDDDISPSMRSEDQKPTQSRLLRIDSECVSSIVNTNNSDHKNDPKNIKTMHMNQQEDTFGSVDIDFSCYPQQSSSGMVSFASNDQNANNQSFHSGGGVSLTLGLQQHGGSGVSIAFPSATEFYTSRDQHMEECQPIHHYSLLDGEGQNMPYRNLMGTQLLHDLA. 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g06519 537 Gene3D - 288 350 - -
Seca12g06519 537 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 68 369 - -
Seca12g06519 537 FunFam BEL1-like homeodomain protein 4 288 350 - -
Seca12g06519 537 SUPERFAMILY Homeodomain-like 286 351 IPR009057 -
Seca12g06519 537 SMART prehox3 97 234 IPR006563 -
Seca12g06519 537 MobiDBLite consensus disorder prediction 354 394 - -
Seca12g06519 537 Pfam Associated with HOX 102 232 IPR006563 -
Seca12g06519 537 MobiDBLite consensus disorder prediction 370 393 - -
Seca12g06519 537 CDD homeodomain 285 346 IPR001356 GO:0003677
Seca12g06519 537 SMART HOX_1 285 349 IPR001356 GO:0003677
Seca12g06519 537 ProSiteProfiles 'Homeobox' domain profile. 282 345 IPR001356 GO:0003677
Seca12g06519 537 Pfam Homeobox KN domain 302 341 IPR008422 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g06519 Seca-Chr12 157201125 157203963 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g06519 7 537 Homeobox Transcription Factor Family AT5G41410 44.224 5.45e-131 393
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Seca12g06519 POX 1.1e-43 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g06519 - - lang:109331282 683.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g06519 12 157201125 157203963 Seca12g06519 12 157201125 157203963 ECH
Seca12g06519 12 157201125 157203963 Seca12g06520 12 157216217 157218741 PCT