Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g06511 ATGTCTTCTGATCTGTATGGTTTTGGCACTAGTTTGCACACACATTCAAGCTCAGAACTGGTCTCCTCTGAAGGAGGTGGAGACCTTCCATTTTTCTCTGACCCTTTCCCTTTCTTCACCAGCTCTCACACTCACACTGATGTAGCTCAACACAATTCCAACCCATTTGATGAAGCTCTTCCTTCTCTTGACCCATTTTCTTCCACTCCTTTTTTCTCCTTCTCTCCTCCAAGTTCCCACTTGGAAAGCCTCAGCCTTTATCATCATCAGGCTACTAATAACCGTGTGCAGCCTCTGTCAAATGGCACAAATCTAGCAAGTGAATTGGCAAGTTTCTCAGCTTTTGATGGGTCAGAAGTGAAAAGTGAGGGTGTTGATTACACCTACAATCAGCAATTCCTTCCTCATAGTTACAGTGGTGCTGAGAATGTATATAAGTACATGCAATTGCAAAGGAGCTTCAGCAGTAACTCTTTTGAAGGGAAGCCAGGTTTTCAGTTCCAACCTCAACATGATGCTCTGCTTGACGATTCCCCAAAATTTCAAAGCCATGACATGGACTCTCCTGAAAACAGTGGACAAATGAGGAGGGTCTGCAGCACAGGAGACTTGCAGAACATGAAAGCAAATCACATGTCTCCAACGGAAGGACCGTTGTTAGAGGAACCAAACTTCAAAGTAGGGCGTTATAGTGCTGAAGAAAGAAAAGAAAAAATTTCAAAATACAGAGCCAAGAGAACCCAGAGGAACTTCAACAAGACCATCAAGTATGCATGCCGAAAGACACTAGCCGACAATCGACCACGCATACGTGGCAGGTTTGCTCGCAACGACGAGGCCAGCGAGATTCTCAAGGCTCCGTGTTCTGCCAGAGATGAAGACGAAGTCGATTTCTGGATTGAAGAATTGCGGTTGCATGAGGAGCAAGACGATGTAACAGTACTGGGAGCAGAACAATATGTGAAAAGCTATGGAGCTAGTCAGTTTCAATACTGTGGCTTTTGA 1005 0.4478 MSSDLYGFGTSLHTHSSSELVSSEGGGDLPFFSDPFPFFTSSHTHTDVAQHNSNPFDEALPSLDPFSSTPFFSFSPPSSHLESLSLYHHQATNNRVQPLSNGTNLASELASFSAFDGSEVKSEGVDYTYNQQFLPHSYSGAENVYKYMQLQRSFSSNSFEGKPGFQFQPQHDALLDDSPKFQSHDMDSPENSGQMRRVCSTGDLQNMKANHMSPTEGPLLEEPNFKVGRYSAEERKEKISKYRAKRTQRNFNKTIKYACRKTLADNRPRIRGRFARNDEASEILKAPCSARDEDEVDFWIEELRLHEEQDDVTVLGAEQYVKSYGASQFQYCGF. 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g06511 334 Pfam CCT motif 235 277 IPR010402 GO:0005515
Seca12g06511 334 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 45 297 IPR045281 GO:0009909
Seca12g06511 334 ProSiteProfiles CCT domain profile. 235 277 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g06511 Seca-Chr12 157113003 157115171 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g06511 231 282 C2C2-CO-like Transcription Factor Family AT5G24930 48.077 2.77e-10 58.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Seca12g06511 CCT 6.1e-18 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g06511 - - gmx:102665661 382.104
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g06511 12 157113003 157115171 Seca12g06511 12 157113003 157115171 ECH
Seca12g06511 12 157113003 157115171 Seca12g06511 12 157113003 157115171 PCT