Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g06509 ATGGAAGACAATGAATGTCAACCACTTGAAATTGATAAGCCCAAGGATATTTTTCTTGGACAAATTGTTTATAGTATGGACAAAGCCTATAACTTATACCAAGAACATGCTTTCAAAATGGGCTTTAGTGTAAGAAAAGGGAGGCAATTGTATTACGATAATGAGAAGAAGATCACACGCTTGAAAGAATTTTATTGCTCCAAGGAAGGGTTTAAGAATAATGAAGCCGAAGGTGAAGTGGCTTATGGAAGAGCAGATTCAAGGACAAATTGCAAAGCCATGGTGAGATTTAATGTGAGCAAGGATGGAGTGTGGAAAATTACAAAATTAGAAATGAATCACAACCACAACTTTGTGCCATCTGAGCAAAGGCATTTGTTACGTTTTATGAGAAAAGTATCACAAGCCAAATGA 414 0.3623 MEDNECQPLEIDKPKDIFLGQIVYSMDKAYNLYQEHAFKMGFSVRKGRQLYYDNEKKITRLKEFYCSKEGFKNNEAEGEVAYGRADSRTNCKAMVRFNVSKDGVWKITKLEMNHNHNFVPSEQRHLLRFMRKVSQAK. 138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g06509 137 Pfam FAR1 DNA-binding domain 32 120 IPR004330 -
Seca12g06509 137 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 11 135 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g06509 Seca-Chr12 157092824 157093237 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca12g06509 FAR1 4.1e-22 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g06509 - - tpra:123905334 232.261