Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g06506 ATGGAAGGATGGTCAACTTTCTCAAATGGGTATTCCTTAGATTGCCTTGGAGTTGAAACTGTTGGGGCATTTCATGGTAACGGTTGTTGCCTTGTAAAAGATCACGTAGATAGTGCTGACCATGACAAAGCTAAACAAAAATGTTTGTTTTATCAACTTTTTGCTGTTTACCTAAAGGAGGATTGTTCTAGAGGCATTGTTAGGCCTGTGCCGGTTTTGCTCGGTGATGGTCAATTGCTAGATTTGTACAAACTGTTCTCCCTTGTGAAGGAAAGAGGCGGGTATGCTGTGGTGTCGAGAAAAGGATTGTGGGGCTATGTGACAAAGGAATTGGATTTGAACCTTCAAGTTTTGGCTTCGGTGAAATTAGTTTATGATAAGTATCTGACTGATTTTGAAGGATGGCTCAGGGAAACTTTTGAAGGGAATAATTTCAAAAATGGGAATAACGGGTGTGATTGGGGTTCTAAGTCGTTGCCATTAGATCTAGCTGGGGAGTTTAGAGGCCTATTATGCTCAAATGTAAAGGACAAAGATGATGAACTTGTCCAGTTAGAACCAAATAAAATTATAAAGTACATTGATTTGGTTAACCACAAGAGTGATACTAATTTGTTGGACACCAAAAATCAAAATAACAAATGTGAGGATGCCCAACATCCTGATGGCGATGATGATGAAAAACTCAGTAATGGTACTGATGATGATCTTGCTACCTCGGTCGCGGAAATTGCCGAGAAGGAATTTAACTCTCGCAAACGCAAAAGGGAGGCATTATCAGGAATGCTAAACTGGATGAAACATATTGCAAAGCATCCTCTTGATCCTTTAACCCAGTCAATACCAAAACCATCAAAGTGGAAGGAGTATAAAGGACAGGACTCTTTTGTTCAGATACTGAGGGCAAGAGAGGTTCTGTTGCTGAGACAGCATGTAGAACCAAACAGTGGATCATCTTCTTCGCAGAAGCTGAAGATGCATCCTGCCATGTATGAGGATCATGTTCCTGTTGGTCACCATGGAACAGTGAAATTGAGATGCAGTGAGAGGCTGCCTACCTCTGTTAAATCTCGTTTGTGCTCTTGCTGCAATTCCTGTTCAGACAATGGAAATAGATTGGAAAGTTCAGTCAATATGGAGACAGAAAAATGTCCTCAGGAGAACAAAACTGTAACACCGGATTCGGTGACCGAAAAGATAATAGCTGACCCATCCGAGGATGAATTACTCGAAAAGAAGCAAGTTTCTATAGGTCCTCTTTTCCAAGCCGAAGTTCCCCAATGGACTGGTGTAGTTTCTGAGAGTGACTCTAAATGGTTAGGCACACAAGTATGGCCTTTGAAACATGACTCAAAACATGCTACTGAAACAGATCTTATTGGGAGAGGAAAACAAGGAAAGTGTAGCTGCCAAGTTCAAGGTTCTGTTGAGTGTATCAGATTTCACATTGCTGAAAATAGGATGAAATTGAAGCTTGAATTGGGTTCTGTATTTTACCATTGGGGATTTGATCGCATGGGTGAGGAAGTTTCACTTCAATGGACAGCTGAAGAAGAAAAGAAATTTAAGGATATTATGAAGTCAAATATACCCTCCCAAAATAGGTTTTTTTGGAACAATTCATCCAAATACTTCCCAAAGAAGACAAGAAAAAACTTGGTGAGCTATTACTTCAATGTATTTCTTATTCAGCTAAGAAGCTATCAGAATCGTGTTACTCCAAATAGTGTTGATAGTGATGATGATGAAGTAGAATTTGGATCTTTTGGTGATGGTTTTGGGATGGAAGCTATCAAGGATCCAGGTATTAATTTCCTAGAGTGTTCAGAGAACAAGCAGTGCACTGATTTTGAGTAG 1857 0.3996 MEGWSTFSNGYSLDCLGVETVGAFHGNGCCLVKDHVDSADHDKAKQKCLFYQLFAVYLKEDCSRGIVRPVPVLLGDGQLLDLYKLFSLVKERGGYAVVSRKGLWGYVTKELDLNLQVLASVKLVYDKYLTDFEGWLRETFEGNNFKNGNNGCDWGSKSLPLDLAGEFRGLLCSNVKDKDDELVQLEPNKIIKYIDLVNHKSDTNLLDTKNQNNKCEDAQHPDGDDDEKLSNGTDDDLATSVAEIAEKEFNSRKRKREALSGMLNWMKHIAKHPLDPLTQSIPKPSKWKEYKGQDSFVQILRAREVLLLRQHVEPNSGSSSSQKLKMHPAMYEDHVPVGHHGTVKLRCSERLPTSVKSRLCSCCNSCSDNGNRLESSVNMETEKCPQENKTVTPDSVTEKIIADPSEDELLEKKQVSIGPLFQAEVPQWTGVVSESDSKWLGTQVWPLKHDSKHATETDLIGRGKQGKCSCQVQGSVECIRFHIAENRMKLKLELGSVFYHWGFDRMGEEVSLQWTAEEEKKFKDIMKSNIPSQNRFFWNNSSKYFPKKTRKNLVSYYFNVFLIQLRSYQNRVTPNSVDSDDDEVEFGSFGDGFGMEAIKDPGINFLECSENKQCTDFE. 619
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g06506 618 Gene3D - 33 145 IPR036431 GO:0003677
Seca12g06506 618 Pfam ARID/BRIGHT DNA binding domain 53 133 IPR001606 GO:0003677
Seca12g06506 618 CDD SANT 514 561 IPR001005 -
Seca12g06506 618 SUPERFAMILY ARID-like 43 138 IPR036431 GO:0003677
Seca12g06506 618 ProSiteProfiles ARID domain profile. 44 137 IPR001606 GO:0003677
Seca12g06506 618 CDD ARID 83 133 - -
Seca12g06506 618 MobiDBLite consensus disorder prediction 209 235 - -
Seca12g06506 618 SMART ARID_2 41 133 - -
Seca12g06506 618 MobiDBLite consensus disorder prediction 213 227 - -
Seca12g06506 618 SMART bright_3 45 138 IPR001606 GO:0003677
Seca12g06506 618 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 2 38 615 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g06506 Seca-Chr12 157076330 157084836 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Seca12g06506 ARID 1.9e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g06506 - - gmx:100819320 900.197