Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g06497 ATGCCGTCATGGTGGGGAAAGTCTCCATCCAAAGAGGTGAATAGGAAGGCAAATAGGGAAAGTATTCTTGATACAATACAACGGAAATTAAAGAATGCTTCTGAAGAGAAGCGCAACAACAAATCAGGAGGATCAAGGAGACATCATAGTGGCGCTATCCCAGAGAAGGGATCTAAATCCATCATACCTTCAAGATCACCATCACCCTCTATGCATGTATCGCGCTGCCAAAGTTTTGATGAAAGACATTCTCAGCCACTCCCTTTGCCAGGCTCACACCTTCCTACTGTTGATGATGCAGATTCTGCAATTATTTTAACATCAAAACTGCAAAAAGCCAGGGGCTCTAAACCATCTATATATTGTCCTCTACCAAAACCTGGTTATGTATCTAACAGGGGAGATCCGACAGATGCTGAAGGAGATATAGCCACTGCATCTGTTTCCAGTGATAGCTCTATTGACAGTGGTGACTCAGCTGATTCACAACTTGTTAGTCCTCTGGAATCCGACTGTGAAAATGGAAACAGAGCCACTATTAATAGTTCATTTAGGGTGGTGCACAAGGATCAATTGACTGTTATACAAAGAAACTCAAGAGTATCCTCAAAACCAGCTCCTCAGTTGTGCAATAATAAGCTTTTATATACATCAGCAAGAGGGGTTCCCTTGCATCTGCAAAATCTGCAAATAGCTCGTCCAGGTGGATTGTGCAGTGCTCCAAATAGTTTAATGTCAAGTCCTTCTAGAAGTCCAATGAGAGCATTTGGTCCTGAGCAAGTGTTGAACTCTGGATTCTGCACAGGAAAGCTTTATCCAGATATAGCTTCTGGGCACTGCTCTAGTCCTGGTTCATGCCATAATTCTAGCCATAAATCAGTTGGTGAGGATCCGTCACGACAGATATTTTGTCCACACAACCGGTGTAGCCCTGAGTGTTCTCCAATACCTAGTCCCAGAATAACAAGCTCAGGTCCTAGTTCCAGGATACAGAGTGGTACTGTCACTCCTCTGCATCCACAAGTTGGATGTGCTGTAGCAGAATCACCAAGAAGACGTCCTGACGATGTGAAAAAACAATCTCACCGTTTACCACTTCCTCCAATAACAGTCACTAAATCTCGTCCATTTTCTCCAACCTATTCTGCATCCACAACTCCCACCCCTCGTAGTCCTGCCCGAGCAGAAAATCTAACAAGCCCAAGTTCACGCTGGAAGAAGGGGCAGTTGCTTGGAAGGGGAACATTTGGGCATGTATATCTTGGTTTTAACAGAGAAAGTGGTGAGATGTGTGCAATGAAGGAGGTAACCCTTTTCTCAGATGATGCTAAATCAAGGGAATGTGCGCAGCAACTTGGCCAAGAAATTGCATTGCTAAGTCGGTTGCGGCATCCAAATATAGTCCAATACTATGGATCTGAGGAGGTAGATGACAAGCTTTATATATACTTGGAGTATGTCTCTGGTGGGTCAATCTATAAACTAGTTCAAGAATATGGCCAATTGGGTGAAATTGCTATTCGTAATTACACTCGGCAAATTCTGTCTGGGCTTGCATATTTACATGCTAAGAACACTGTTCACAGGGACATCAAAGGAGCAAACATATTGGTGGATCCTAATGGAAGGATAAAATTAGCAGATTTTGGGATGGCAAAGCATATTAGTGGCGAGTCTTGTCCATTTTCTTTCAAAGGAAGTCCATATTGGATGGCACCTGAGGTTATAAAAAATTCAAATGGTTGTAATCTTGCTGTTGATATTTGGAGTCTGGGATGCACTGTTTTGGAGATGGCAACAACAAAACCTCCTTGGAGCCAGTATGAAGGGGTTGCTGCTCTGTTTAAGATTGGGAACAGCAAGGAACTTCCTACTATTCCAGCTCATCTATCAGAAGAGGGAAAAGATTTTGTCAGGCTTTGTTTGCAAAGGAATCCACTAAATCGTCCCTCAGCTGGTCAACTTTTAGAGCATCCATTTGTAAAAAATGCTATGCTGGAAAGACACATTTTGACTGCTTCTCCTTCAGAAGCACCAGCCGCTATTATAAATGCAGTGAGATCTCTGGCCATTGGACCTGCAAAACCTAATTTATGCTTAGACTCGGAAGTGGCTGGTATCTGTCCGTCTAGAAGCTTGAGAGCTGTTTCTGGATCAAGTGATGCACATACACCAAGGAACTTGTCGTGTCCCATTTCTCCCTCTAGGAGCCTACCTTTGCCTTCTAGATCATTGCATGCGAGTGGAAGGATGTCTCCCTCTCCGATATCTAGTCCCCATACTGCATCTGGCTCATCTACACCGCTCACCAGTGGTGGTGGTGCTATCCCATTTCATCTAACAAAGCAACCAATACTCTCATATGAAGATGTGGGTATGATCCAAAAGTCTCAGAATGGCTTATATTCAAGTGGAAACACTGCCTATCTGGGTTCAGGGAGAAAAACGCAAACTACACATGCTTGCCGGGATATAGCTTCATCTGATAATGACATTCTTGCAAACCATGATAAGAGGGCTGTACAGGGAGATCCAAGAGAATTTCATGAGGGGAAGTCATATTTGGTTGATTGTATGTCGCAACAGTTGTTGAGGGATTATATGCGGCTAAATGCATCCCTAGGTATTTTGCCCAGTTCCCCGATGCTTGGTCGCAAAAATGGCTATGATCGGCATGTTAGTGATCAGACGGAGACACCGGGCATGTGA 2709 0.4374 MPSWWGKSPSKEVNRKANRESILDTIQRKLKNASEEKRNNKSGGSRRHHSGAIPEKGSKSIIPSRSPSPSMHVSRCQSFDERHSQPLPLPGSHLPTVDDADSAIILTSKLQKARGSKPSIYCPLPKPGYVSNRGDPTDAEGDIATASVSSDSSIDSGDSADSQLVSPLESDCENGNRATINSSFRVVHKDQLTVIQRNSRVSSKPAPQLCNNKLLYTSARGVPLHLQNLQIARPGGLCSAPNSLMSSPSRSPMRAFGPEQVLNSGFCTGKLYPDIASGHCSSPGSCHNSSHKSVGEDPSRQIFCPHNRCSPECSPIPSPRITSSGPSSRIQSGTVTPLHPQVGCAVAESPRRRPDDVKKQSHRLPLPPITVTKSRPFSPTYSASTTPTPRSPARAENLTSPSSRWKKGQLLGRGTFGHVYLGFNRESGEMCAMKEVTLFSDDAKSRECAQQLGQEIALLSRLRHPNIVQYYGSEEVDDKLYIYLEYVSGGSIYKLVQEYGQLGEIAIRNYTRQILSGLAYLHAKNTVHRDIKGANILVDPNGRIKLADFGMAKHISGESCPFSFKGSPYWMAPEVIKNSNGCNLAVDIWSLGCTVLEMATTKPPWSQYEGVAALFKIGNSKELPTIPAHLSEEGKDFVRLCLQRNPLNRPSAGQLLEHPFVKNAMLERHILTASPSEAPAAIINAVRSLAIGPAKPNLCLDSEVAGICPSRSLRAVSGSSDAHTPRNLSCPISPSRSLPLPSRSLHASGRMSPSPISSPHTASGSSTPLTSGGGAIPFHLTKQPILSYEDVGMIQKSQNGLYSSGNTAYLGSGRKTQTTHACRDIASSDNDILANHDKRAVQGDPREFHEGKSYLVDCMSQQLLRDYMRLNASLGILPSSPMLGRKNGYDRHVSDQTETPGM. 903
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g06497 902 MobiDBLite consensus disorder prediction 715 772 - -
Seca12g06497 902 Coils Coil 16 36 - -
Seca12g06497 902 MobiDBLite consensus disorder prediction 126 173 - -
Seca12g06497 902 Pfam Protein kinase domain 406 661 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g06497 902 SUPERFAMILY Protein kinase-like (PK-like) 403 742 IPR011009 -
Seca12g06497 902 MobiDBLite consensus disorder prediction 1 96 - -
Seca12g06497 902 MobiDBLite consensus disorder prediction 715 774 - -
Seca12g06497 902 SMART serkin_6 405 661 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g06497 902 Gene3D Transferase(Phosphotransferase) domain 1 402 683 - -
Seca12g06497 902 CDD STKc_MEKK1_plant 404 661 - -
Seca12g06497 902 MobiDBLite consensus disorder prediction 316 338 - -
Seca12g06497 902 MobiDBLite consensus disorder prediction 12 54 - -
Seca12g06497 902 FunFam Mitogen-activated protein kinase kinase kinase 403 685 - -
Seca12g06497 902 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 54 673 - -
Seca12g06497 902 MobiDBLite consensus disorder prediction 61 75 - -
Seca12g06497 902 MobiDBLite consensus disorder prediction 143 173 - -
Seca12g06497 902 ProSitePatterns Protein kinases ATP-binding region signature. 411 434 IPR017441 GO:0005524
Seca12g06497 902 ProSiteProfiles Protein kinase domain profile. 405 661 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g06497 902 MobiDBLite consensus disorder prediction 373 401 - -
Seca12g06497 902 MobiDBLite consensus disorder prediction 315 401 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g06497 Seca-Chr12 156983949 156990619 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g06497 1 788 MAP Kinase Kinase Kinase AT1G63700 63.363 0.0 877
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Seca12g06497 Pkinase 5.5e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g06497 K20717 - gmx:100814422 1176.39