Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g06488 ATGGTGCAAGACAACATGAAGAAACAACTTGCTTTGGCTTTGAGAAGCATCCAGTGGAGCTATGCAATTTTCTGGTCTGATTCAGCTAACCAACCAGGCAGGGTATTGAGTTGGAGGGAAGGGTATTATAATGGAGATATTAAGACTAGGAAAACAAGTCAAGGGGTAGAACTTAATTCTGATCAAATTGGGTTGCAAAGGAGTGAACAGCTGCGAGAGCTATTCAAGTCTCTCAAAACTGCAGAAATCAACCCACAAACAAAAAAGCCTTCAGCGACTCTATCCCCTGAAGATCTCACAGATACAGAGTGGTATTATTTGGTTTGTATGTCCTTTGTATTCAACATTGGCCAAGGGTTACCAGGAAGAGCTCTAGCGAATGGTCAACCCATTTGGCTGAACAATGCCTCTTCCATTGATTGCAAAATTTTTAGTCGCTCTCTTTTGGCAAAGAGTGGATCCATTCAGACAGTGGTGTGTTTTCCTTTTATGGAAGGGGTTATTGAGCTAGGTACAACTGAGCAGGTCTCAGAAGATCTCAGTCTCATTCAACGGATCAAAACTTCTTTCTTGAATAATCTGCATGCCAATGATCCTATTAAGTCTGGAGCTACATTGAAATCAAGGAATGAGGAAGGTGTTGATTGTGTAGCATTTGATCATAATGCTTATAATGTTGAATTAATTCCTGAAGTTGGATATGGTGTAATCAACACAACAACCTCGCCTAATGGTAGTTCAAATGCATTCCAAATCAATCAACCACCAGATGAAACATTCATGGTTGAAAGCATAAACCATGGCACCTCTCAAGTCCAAAACTGGCAAGTTATTGATGATGAATTGAGCAATGGTGTCCACAACTCCATGAATTCTAGTGACTGTATATCACAAAGTTTTGTCAGTCCTGAGAAGATAGCTTCTGCTCCCAAGGGTGCTAACCATTTTGACCGTTGCACTCAAGACCTTGAAAAGTGCAATAACCCAACAATGACCTTAGTGGATCCTCGAAGTGATGATTGGCATTATCAGAGAGTTCTTTCTGCCCTTTTGAAAAGCTCAGACCAGTTAATGATGGGGATGCATTTTCAAAACTTTCATCAGGAATCAACCTTTTCTAGTTGGAAGAAAGGAGTGTCAGTGTATTGCCAAAGGCCAAGAGCAGGAACCTCACAAAACTTATTGAAGAAGGTATTGTTTGAAGTTCCTAGGATGCATATGGATGGGCTGCTTGAGTCTCAAGAAGAGAATGACTATAAAGAGGGAACAAGACTAGAGGCTGATGAAATTGGTATGAACCACGTTTTGTCAGAAAGAAGGAGAAGAGCAAAACTAAATGAAAGGTTTTTAACCCTTAGATCAATGGTCCCTTCAAATAGTAAGGATGACAAAGTTTCAATACTAGATGATGCAATTGAATACCTTAAAAAGCTTGAGAAAAGGGTAAGAGAGTTAGAAGCTAAGAGGGAACTAACAGATATAGAGAGTAGGAGTAAAAAATCATCTCATGATATGGGGGAGAGGACTTCAGATCATTATTTTAACAAAGCTAATAGTGGCAAGAAAACAGTGGTAAAAAAGAGGAAAGTCTGTGACATAGAGGAGGCAGGGAGAGAGATTAATTCAGATGCTTTAAGAGGCAGTTCTGCAAATGATGTTACTGTCAGTATAAGTGACAATGAAGTTATGATAGAAATGAGGTGCCCTTGCAGAACAGGAAGGTTGTTGGAAATTATAGAAGCAGTTAGCAGTCTCAATATAGATATAGATTTTAATTCAGTTCAGTCAACAGAAGCTGATGGGAATCTTTATCTGACCATTAAATCTAAGTTCACAGGACCAACTAATGCAACAGCAAAAAGGATCAAACAAACACTCCAAAAAGTGGTTTCCAAGTGTTGA 1902 0.3933 MVQDNMKKQLALALRSIQWSYAIFWSDSANQPGRVLSWREGYYNGDIKTRKTSQGVELNSDQIGLQRSEQLRELFKSLKTAEINPQTKKPSATLSPEDLTDTEWYYLVCMSFVFNIGQGLPGRALANGQPIWLNNASSIDCKIFSRSLLAKSGSIQTVVCFPFMEGVIELGTTEQVSEDLSLIQRIKTSFLNNLHANDPIKSGATLKSRNEEGVDCVAFDHNAYNVELIPEVGYGVINTTTSPNGSSNAFQINQPPDETFMVESINHGTSQVQNWQVIDDELSNGVHNSMNSSDCISQSFVSPEKIASAPKGANHFDRCTQDLEKCNNPTMTLVDPRSDDWHYQRVLSALLKSSDQLMMGMHFQNFHQESTFSSWKKGVSVYCQRPRAGTSQNLLKKVLFEVPRMHMDGLLESQEENDYKEGTRLEADEIGMNHVLSERRRRAKLNERFLTLRSMVPSNSKDDKVSILDDAIEYLKKLEKRVRELEAKRELTDIESRSKKSSHDMGERTSDHYFNKANSGKKTVVKKRKVCDIEEAGREINSDALRGSSANDVTVSISDNEVMIEMRCPCRTGRLLEIIEAVSSLNIDIDFNSVQSTEADGNLYLTIKSKFTGPTNATAKRIKQTLQKVVSKC. 634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g06488 633 MobiDBLite consensus disorder prediction 493 515 - -
Seca12g06488 633 Pfam Helix-loop-helix DNA-binding domain 433 479 IPR011598 GO:0046983
Seca12g06488 633 Coils Coil 468 495 - -
Seca12g06488 633 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 7 190 IPR025610 -
Seca12g06488 633 Gene3D - 428 490 IPR036638 GO:0046983
Seca12g06488 633 PANTHER TRANSCRIPTION FACTOR TT8 3 631 - -
Seca12g06488 633 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 429 478 IPR011598 GO:0046983
Seca12g06488 633 SMART finulus 435 484 IPR011598 GO:0046983
Seca12g06488 633 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 431 492 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g06488 Seca-Chr12 156926312 156930354 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g06488 2 633 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G41315 46.341 3.12e-177 516
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca12g06488 bHLH-MYC_N 2.1e-51 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g06488 - - gmx:100808167 961.059
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g06488 12 156926312 156930354 Seca12g06488 12 156926312 156930354 ECH