Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g06484 ATGTCTGGATGCAATAAATCACCTAAACATAATCAACATTCAATCAAATATTGGGGGATTCAACATGTGGGGGCATCCTTTCAGGCTGATCTTTCTTGTGTGCATTATTCACCTTCTCTTTCCCATAATGAGAATAAGCAAAAGCAATGCTGCAGAAGTTCTCAACAGAAGTCCCCAGAGATACTGAGCACTGCTCAGCTTATCTCTGCAATAGGCCAGATATGGGATTCTGCAAGTCGGCCACTTTCATTTTTGCTCCCGAAGGAAAATGGGAATCAAGATGATAAAGGACTTCCAAAAGAGAAAATTCTGGATAGCATTGATGAGAAAAGGAAAAATGTGGTTACTTCAAATAAGACTAATTACTATCCTGTTAATATGGAGCCTACTGGCTTTGGTTCACAGATTGTGCAGGAAAAATTGCATTTCCCTAAGGTAACACAGAAGATGTTAGTACTTGAATCTTCTAATAAAAGTCAAGATTATATTTATTCTTTATTCCATAGATTTTTGCCGGCCAGTGATAAAAATTCATACAAATATTGGGAAGAAATGGAACTTGGGAGTGAGGAAATCTCATTTAGATCAGGAAATGTGTATTGGTGGATGAGTAGGAATGCTCCTAAAGGGCTAAACTGTCATGCAAAGGTTACTGAGCCTGAGGATCTGAAAACCGTTTCTCAGGTTGCTGGGGGCTGTATTTCAACAGGTACAAGAACCCCTTCATTGGCTGATGAGAGTGATGTGTGCTGTCCTGATTTAGTCATACACGAAGCTCAACAATTATCTAATGATGCCATTCTGGACACAAGAAAAGTTAGCCCTCTGTGTTCAGACTATTTTCTTCAAGCTGTGCCTGATACTAAGGCAGATGTTGGGGCTTGTCAGACCCTAAGTTCTAGTATCTACGCAGACTATCATATCAACTCCTTAGCTGCCTGTAGTAGTGCTTCTGTGCAATGCCAACACAACATTGATGATAATGAATTGCCGGAAATCCAAAGAAAACATTTCTCGGAAATAAGTGATCATGAACCTAAGGTTCAGGTCTTCTCTGAAACCCATCAGAAGCCTTGTCATTTCCTTGCCAAGCAAGAACATGCTTTTTCTGGGGCATTGGCTGGAATATGTGTCAGCCTTTGTCTGCATCCCTTTGACACAATTAAGACAGTCATTCAATCATGCCGAGCAGAACATAGGTCCATCTTTTACATTGGCAAATCAATTGTTTCTGATAGAGGTTTGCCTGCACTATATCGTGGAATTACTACAAACATTGCATCCTCAGCTCCAATTTCTGCAGTTTATACTTTCACCTACGAATCAGTTAAAGCAGCTTTGCTTCCTTACCTTCCAAAGGAGTATTATTCTTTTGCCCATTGTGTGGGAGGTGGTTGTGCAAGCATTGCCACTTCTTTCATTTTTACTCCTAGTGAGCGTATAAAACAGCAGATGCAAGTTAGATCTCACTATCACAATTGCTGGGATGTATTAGTTGGGATTATCAGAAAGGGTGGTTTTTCCTCCCTATATGCAGGTTGGGGAGCTGTGCTGTGCCGGAATATTCCACATTCAATTGTCAAGTTTTACACATATGAAAGCTTGAAGCAAGCGATGCCATCTAATATTCAGTCCAACACGTTTCAAACTTTAGTGTGTGGAGGATTGGCTGGGTCTACCGCTGCTTTATTCACAACTCCTTTTGATGTGATCAAGACTAGATTACAGACACAGGTTTATAATAAACAAATCAAAGTGAGTGCACTGCAGATTCCTGGATCTATGAATCAATATGATAGTGTGCTCCATGCCCTTTACAAAATTAGCAAAAGTGAAGGTTTGAAGGGCCTATACAGGGGGTTGACTCCACGGTTGATTATGTACATGTCTCAAGGATCACTGTTCTTTGCTTCATATGAATTTTTCAAGAGGGTATTTTCTCTGGAAGCATCACCTCCCACTGGTTTATACATCCAGGATGATAACAAGAATGTTGAGAACAGAAAAAATTTAGAATTGACAAGTCCATCATTCATCAGGAGTTGCAGCAGTAGCATCCCCAAGCCTTGA 2070 0.4034 MSGCNKSPKHNQHSIKYWGIQHVGASFQADLSCVHYSPSLSHNENKQKQCCRSSQQKSPEILSTAQLISAIGQIWDSASRPLSFLLPKENGNQDDKGLPKEKILDSIDEKRKNVVTSNKTNYYPVNMEPTGFGSQIVQEKLHFPKVTQKMLVLESSNKSQDYIYSLFHRFLPASDKNSYKYWEEMELGSEEISFRSGNVYWWMSRNAPKGLNCHAKVTEPEDLKTVSQVAGGCISTGTRTPSLADESDVCCPDLVIHEAQQLSNDAILDTRKVSPLCSDYFLQAVPDTKADVGACQTLSSSIYADYHINSLAACSSASVQCQHNIDDNELPEIQRKHFSEISDHEPKVQVFSETHQKPCHFLAKQEHAFSGALAGICVSLCLHPFDTIKTVIQSCRAEHRSIFYIGKSIVSDRGLPALYRGITTNIASSAPISAVYTFTYESVKAALLPYLPKEYYSFAHCVGGGCASIATSFIFTPSERIKQQMQVRSHYHNCWDVLVGIIRKGGFSSLYAGWGAVLCRNIPHSIVKFYTYESLKQAMPSNIQSNTFQTLVCGGLAGSTAALFTTPFDVIKTRLQTQVYNKQIKVSALQIPGSMNQYDSVLHALYKISKSEGLKGLYRGLTPRLIMYMSQGSLFFASYEFFKRVFSLEASPPTGLYIQDDNKNVENRKNLELTSPSFIRSCSSSIPKP. 690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g06484 689 ProSiteProfiles Solute carrier (Solcar) repeat profile. 545 645 IPR018108 -
Seca12g06484 689 FunFam Mitochondrial substrate carrier protein-like 488 659 - -
Seca12g06484 689 ProSiteProfiles Solute carrier (Solcar) repeat profile. 362 446 IPR018108 -
Seca12g06484 689 ProSiteProfiles Solute carrier (Solcar) repeat profile. 455 538 IPR018108 -
Seca12g06484 689 PANTHER S-ADENOSYLMETHIONINE MITOCHONDRIAL CARRIER PROTEIN 343 650 - -
Seca12g06484 689 Pfam Mitochondrial carrier protein 456 539 IPR018108 -
Seca12g06484 689 Pfam Mitochondrial carrier protein 366 447 IPR018108 -
Seca12g06484 689 Pfam Mitochondrial carrier protein 546 647 IPR018108 -
Seca12g06484 689 SUPERFAMILY Mitochondrial carrier 365 642 IPR023395 -
Seca12g06484 689 Gene3D Mitochondrial carrier domain 455 686 IPR023395 -
Seca12g06484 689 Gene3D Mitochondrial carrier domain 335 454 IPR023395 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g06484 Seca-Chr12 156886849 156892050 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g06484 501 652 Chloroplast and Mitochondria Gene Families AT1G07030 26.316 6.67e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g06484 - - gmx:100812271 967.607
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g06484 12 156886849 156892050 Seca12g06484 12 156886849 156892050 ECH