Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g06477 ATGGGTTGTGAATTCTCCAAGTACTCAGCATGCTGCTGGGGTACAGAGCAAGGTGGTCCGGATCCTGAGGCTCACATTGATGAAAATGTAGACAACATTGAGGGCAATGACTTGCCACCCTTTCGTGAGTACACAGTTGATCAACTTAGGAAAGCTACATCTGGATTTGCTATGGAAAATATAGTTTCTGAGCATGGAGAAAAGGCTCCAAATGTTGTCTATAAAGGGAAACTTGAAAATCAAATGCGAATTGCTGTCAAACGGTTCAACAAATCAGCCTGGCCAGATTCCCATCAATTTTTGGAAGAGGCCAAAGCCGTCGGTCAACTGAGGAACCAAAGATTGGCAAATCTGCTCGGATGTTGCAGTGAGGGTGATGAGAGGTTACTTGTATCAGAATATATGTCCAATGATACTTTGGCAAAGCACTTGTTCCATTGGGAAGCTCAGCCCATGAAATGGGCAATGCGATTGAGAGTTGCTCTACACCTTGCCCAAGCTCTGGAGTACTGTACCAACAAAGGACGTGCACTGTATCATGACCTAAATGCTTACAGAGTTCTTTTTGATGATGACTTCAATCCTAAACTTTCATGCTTCGGTTTGATGAAAAACAGTCGAGATGGGAAAAGTTATAGTACAAATTTGGCATTTACTCCACCTGAGTATCTGAGGACAGGTAGAGTTACTCCAGAGAGTGTGACTTACAGCTTTGGGACCCTTTTGCTTGACCTTCTTAGTGGAAAGCATATTCCTCCAAGCCGTGCCCTGGACCTGATTAGGGACAGGAACATTGAGATGCTATCAGACTCATGTTTAGAAGGACAATTTTCAGATGACGAGGGGACTGAACTAGTTCGCTTAGCCTCACGATGCTTACAATCTGAACCGCGAGAGCGTCCTAATCCAAGGTCATTGGTCACTGCTCTTATACCTCTACAGAAGGATTCCGAGGTTAGCTGTTTAGAAGTGGTTCAGCATATTTTATTTTCTGAGACACAAGGATAG 1008 0.4395 MGCEFSKYSACCWGTEQGGPDPEAHIDENVDNIEGNDLPPFREYTVDQLRKATSGFAMENIVSEHGEKAPNVVYKGKLENQMRIAVKRFNKSAWPDSHQFLEEAKAVGQLRNQRLANLLGCCSEGDERLLVSEYMSNDTLAKHLFHWEAQPMKWAMRLRVALHLAQALEYCTNKGRALYHDLNAYRVLFDDDFNPKLSCFGLMKNSRDGKSYSTNLAFTPPEYLRTGRVTPESVTYSFGTLLLDLLSGKHIPPSRALDLIRDRNIEMLSDSCLEGQFSDDEGTELVRLASRCLQSEPRERPNPRSLVTALIPLQKDSEVSCLEVVQHILFSETQG. 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g06477 335 ProSiteProfiles Protein kinase domain profile. 59 330 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g06477 335 Pfam Protein tyrosine and serine/threonine kinase 72 309 IPR001245 GO:0004672|GO:0006468
Seca12g06477 335 FunFam probable serine/threonine-protein kinase At4g35230 31 134 - -
Seca12g06477 335 PANTHER SERINE/THREONINE-PROTEIN KINASE BSK5 28 322 IPR045845 GO:0004672|GO:0009742
Seca12g06477 335 SUPERFAMILY Protein kinase-like (PK-like) 39 317 IPR011009 -
Seca12g06477 335 Gene3D Transferase(Phosphotransferase) domain 1 136 326 - -
Seca12g06477 335 Gene3D Phosphorylase Kinase; domain 1 31 134 - -
Seca12g06477 335 FunFam probable serine/threonine-protein kinase At5g41260 136 327 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g06477 Seca-Chr12 156818204 156825119 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g06477 44 310 Glycoside Hydrolase AT3G07070 34.915 1.01e-44 156
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XII-1 Seca12g06477 PK_Tyr_Ser-Thr 2e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g06477 K14500 - jre:109014463 559.681