Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g06473 ATGGATGGGAGAGAAGCTATGGCATTCTCTGGTGGCTCTGCTCCATATTACATACATAGAGGAGGGATTGCAGGGTCTGCCTCTGGGACACAGACAGGGGGATTGGGGTTTCAAGGACCCCCTGGGTTCAGAGTTTTGCCAAACGCTGGCATTCCAGCTCAGTCAAATGCCCGGGCTCAGGGTGGTTCTGTTGGTTCTAATGCCACATTTTCAGTAGAACCTCAGGTTCGTCCTAGTTATAATCATGACATTAACATTGGTGCCTCTTCTGGGACACCTTCAGCCTCAGTTGAACCTCCTGTGAAAAAGAAAAGAGGGAGACCTCGGAAATATGGTCCTGATGGACCAGTTTCTTTGAGACTGTCTCCAATGTCTGCCCCTGCTAATTCTACCCAGGGTTCAACCACACCTTCTCAGAAACGGGGTAGAGGGCGTCCTCCTGGATCTGGAAGGAAGCAACAGCTAGCTGCATTAGGTGAATGGATGAATAATTCAGCAGGGCTGGCCTTTTCCCCTCATGTTATCACCATTGATGTTGGGGAGGACATTGTAGCAAAGTTATTGTCATTATCACAGCAGAGACCAAGGGCTCTATGCATCATGTCAGCCAATGGGACAGTTTCTAAAGTTACTCTGCGACAGCCTGCTTCTACCATTACCAGTTTTACTTATGAGGGGCGATTTCAAATATTATGCTTGTCTGGTTCCTACTTGGTTGCTGAAGATGGTGGACCCTCCAATAGAACAGGTGGCATAAGTGTTTCCCTTTCTAGCCCGGATGGTCAAGTGATTGGTGGCGGCGCTGCCATGCTTATAGCTGGAAGCTTAGTGCAGGTGGTGGTGTGCAGTTTTGTATATGGTGGCTCCAAGACAAAGACTAAGCAAGGGAGCAGTAGCAAAGATGAAAGTTGTGAGCCTCAGCATAGTGACAAGTTAGCTTCTCCAGCCAGTGCTCCTCCTCCACCTAGTCAAAACTACATGTCTTCTGCAACAGGTGTTTGGCCTGGATCACGACCAGAGCTGAAAAGTGCGCATGCACACACTGGCATTGACTTGACTCGAGGGTGA 1068 0.4897 MDGREAMAFSGGSAPYYIHRGGIAGSASGTQTGGLGFQGPPGFRVLPNAGIPAQSNARAQGGSVGSNATFSVEPQVRPSYNHDINIGASSGTPSASVEPPVKKKRGRPRKYGPDGPVSLRLSPMSAPANSTQGSTTPSQKRGRGRPPGSGRKQQLAALGEWMNNSAGLAFSPHVITIDVGEDIVAKLLSLSQQRPRALCIMSANGTVSKVTLRQPASTITSFTYEGRFQILCLSGSYLVAEDGGPSNRTGGISVSLSSPDGQVIGGGAAMLIAGSLVQVVVCSFVYGGSKTKTKQGSSSKDESCEPQHSDKLASPASAPPPPSQNYMSSATGVWPGSRPELKSAHAHTGIDLTRG. 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g06473 355 Gene3D - 172 298 - -
Seca12g06473 355 SMART AT_hook_2 102 114 IPR017956 GO:0003677
Seca12g06473 355 SMART AT_hook_2 140 152 IPR017956 GO:0003677
Seca12g06473 355 Pfam Plants and Prokaryotes Conserved (PCC) domain 172 285 IPR005175 -
Seca12g06473 355 CDD DUF296 172 284 IPR005175 -
Seca12g06473 355 SUPERFAMILY AF0104/ALDC/Ptd012-like 170 286 - -
Seca12g06473 355 MobiDBLite consensus disorder prediction 21 153 - -
Seca12g06473 355 MobiDBLite consensus disorder prediction 123 142 - -
Seca12g06473 355 ProSiteProfiles PPC domain profile profile. 167 307 IPR005175 -
Seca12g06473 355 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 75 322 IPR039605 GO:0003680
Seca12g06473 355 MobiDBLite consensus disorder prediction 290 355 - -
Seca12g06473 355 MobiDBLite consensus disorder prediction 53 96 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g06473 Seca-Chr12 156749514 156753306 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g06473 1 355 AT-hook Motif Nuclear Localized (AHL) Family AT1G63470 48.586 1.03e-96 290
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g06473 - - gmx:100798706 476.478
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g06473 12 156749514 156753306 Seca12g06473 12 156749514 156753306 ECH
Seca12g06473 12 156749514 156753306 Seca12g06473 12 156749514 156753306 PCT