Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g06463 ATGAAGTTATGTACTACTCCATTGTTGTTTCTCAGTTTGCTTACTTTTGTTGCTTCTGATAAGGGGCTCTCAAATGAAGTTTTGGCCCTTACAACTTTCAAAGAAGCTGTGTATGAAGATCCACATCATGTTTTGTCCAATTGGAATACTCTGGAGTCAGATCCCTGTGACTGGAATGGTGTTTCATGCACTGACACTAGAGATCATGTCATCAAGCTAAACATATCAGGGGCATTATTAAGGGGGTTTCTTGCTCCAGAATTTGGGAAAATCTCCTACTTGAAAGAACTGATCTTGCATGGCAACAATCTCATTGGAACAATACCGAAAGAATTGGGCATGTTAAAATCTCTTCAGGTGTTGGATTTGGGAAAGAATCAGTTATCAGGGCCAATTCCTCCAGAGATTGGAAATATGACTCAAATTGTTAAAATAAACCTGCAGTCCAATGGGTTGACTGGTAGGTTACCTCCAGAGCTAGGAAATTTGAAGTACCTTCAAGAACTTCGGTTGGATAGGAATAAGCTTCAAGGGACTGTTCCTGCTGGTGGCAGTTCAAATTTTGATTCAAATATGCATGGAATGTATGCCTCAAATGCAAGTTTAACTGGCTTCTGTCGTTCATCTCAGCTAAAATTTGCAGATTTTTCATACAACTTTTTTGTTGGTAGCATACCTAAGTGCTTGGAGCATCTTCCAAGATCAAGCTTTCAAGGGAATTGCCTCCAGGTCAAAGACATAAAACAGCGGACTTCTGTGCAATGTGCTGGTGCTTCACCTGCCCAGAGCCATCCAGTAGTGAACCAAAAGCACCAACCTGCTGCTGAACACATGTCCAAGCATCAAGGAGCATCAAAACCTGCTTGGCTTTTGCCTATAGAAATAGTGACTGGAACCATGGTTGGTTCTCTCTTTCTGATTGCTATTCTCACTGCTTTCCATAGATGCAACAACAAATCATCTATCATTATTCCTTGGAAAAAATCTGCAAGTGAGAAAGAGAACATTGCAGTATATATAGACTCTGAGATGTTGAAGGATGTGATGAGGTATAGCAGACAAGACCTTGAAGTGGCCTGTGAAGACTTCAGCAACATAATTGGGTCCTCACCAGATAGTGTGGTCTACAAGGGTACAATGAAAGGTGGTCCTGAGATTGCTGTAATTTCCCTCTGCATCAAGGAAGAGAATTGGACAGGACATCTTGAGCTCTATTTTCAGAGAGAGGTGGCAGACTTGGCAAGGCTAAATCATGATAATACAGGAAAGCTACTAGGCTATTGTAGAGAGAGTACCCCATTTACAAGGATGCTTGTTTTTGAGTATGCATCAAATGGGACACTTTATGAGCACCTACATTGTTATGAAGAAGGGTGCCAGTTATCTTGGACACGGCGAATGAAAATCATCATAGGCATTGCACGTGGACTAAAGTATTTGCACACTGAAGTTGAGCCACCATTCACTATCTCAGAGCTGAATTCCAACGCTGTATACCTTACAGAAGATTTTTCCCCTAAGCTGGTTGATTTTGAAAGTTGGAAGACAATTCTTGAAAGATCAGAAAAAAGCTCTGGTTCTGTTGGCAGCCAAGGTTCTGTTTGTGTTCTTCCAAACTCCCTTGAAGCACGCCATCTTGATACCAAAGGAAACGTTTATGCTTTTGCAGTACTTCTACTGGAGATAATCAGTGGAAGACCTCCATACTGCAAGGACAAAGGGTACTTGGTGGATTGGGCCAGGGACTACCTTGAAATCCCAGAAGTAATGTCATATGTGGTGGATCCTGAATTGAAGCATTTTAGATATGAGGACCTCAAAGTTATATGTGAGGTAGTAAGTCTTTGTATCAGTCCTGATCCCACTGTCCGTCCATCAATGCAAGAATTATGCAGCATGCTGGAGAGCAGAATTGACACATCAATAAGTGTGGACCTCAAGGCATCATCTTTGGCTTGGGCTGAACTAGCACTTTCATCATAA 1983 0.417 MKLCTTPLLFLSLLTFVASDKGLSNEVLALTTFKEAVYEDPHHVLSNWNTLESDPCDWNGVSCTDTRDHVIKLNISGALLRGFLAPEFGKISYLKELILHGNNLIGTIPKELGMLKSLQVLDLGKNQLSGPIPPEIGNMTQIVKINLQSNGLTGRLPPELGNLKYLQELRLDRNKLQGTVPAGGSSNFDSNMHGMYASNASLTGFCRSSQLKFADFSYNFFVGSIPKCLEHLPRSSFQGNCLQVKDIKQRTSVQCAGASPAQSHPVVNQKHQPAAEHMSKHQGASKPAWLLPIEIVTGTMVGSLFLIAILTAFHRCNNKSSIIIPWKKSASEKENIAVYIDSEMLKDVMRYSRQDLEVACEDFSNIIGSSPDSVVYKGTMKGGPEIAVISLCIKEENWTGHLELYFQREVADLARLNHDNTGKLLGYCRESTPFTRMLVFEYASNGTLYEHLHCYEEGCQLSWTRRMKIIIGIARGLKYLHTEVEPPFTISELNSNAVYLTEDFSPKLVDFESWKTILERSEKSSGSVGSQGSVCVLPNSLEARHLDTKGNVYAFAVLLLEIISGRPPYCKDKGYLVDWARDYLEIPEVMSYVVDPELKHFRYEDLKVICEVVSLCISPDPTVRPSMQELCSMLESRIDTSISVDLKASSLAWAELALSS. 661
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g06463 660 PANTHER PROTEIN MALE DISCOVERER 2 13 658 - -
Seca12g06463 660 Gene3D Transferase(Phosphotransferase) domain 1 443 649 - -
Seca12g06463 660 Gene3D Ribonuclease Inhibitor 139 260 IPR032675 -
Seca12g06463 660 FunFam Inactive receptor-like serine/threonine-protein kinase 335 442 - -
Seca12g06463 660 Pfam Protein tyrosine and serine/threonine kinase 364 634 IPR001245 GO:0004672|GO:0006468
Seca12g06463 660 Gene3D Ribonuclease Inhibitor 25 138 IPR032675 -
Seca12g06463 660 SUPERFAMILY L domain-like 25 233 - -
Seca12g06463 660 Gene3D Phosphorylase Kinase; domain 1 334 442 - -
Seca12g06463 660 SUPERFAMILY Protein kinase-like (PK-like) 341 635 IPR011009 -
Seca12g06463 660 Pfam Leucine rich repeat N-terminal domain 24 63 IPR013210 -
Seca12g06463 660 ProSiteProfiles Protein kinase domain profile. 361 638 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g06463 660 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 23 186 - -
Seca12g06463 660 Pfam Leucine rich repeat 93 152 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g06463 Seca-Chr12 156699784 156704703 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g06463 1 634 Receptor kinase-like Gene Family AT1G25320 27.684 4.24e-58 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-2 Seca12g06463 PK_Tyr_Ser-Thr 4.6e-20 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g06463 - - gmx:100779744 1115.14