Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g06457 ATGGCATTCAGTGGAACCCAACAAAAATGCAAGGCTTGTGACAAAACCGTTCACTTCGTTGATACATTATCTGCCGATGGTGTTGTTTATCACAAGAACTGCTTCCGATGCAGTCATTGCAATGGCCTTCTTGTGATAAGCAACTATTCATCAATGGAAGGAGTTTTGTACTGCAAGGTTCACTTTGAGCAGCTTTTCAAGGAAACCGGCACCTTAACCAAGAAATTTCAATCTGGGTGGAAAGCCTAA 249 0.4217 MAFSGTQQKCKACDKTVHFVDTLSADGVVYHKNCFRCSHCNGLLVISNYSSMEGVLYCKVHFEQLFKETGTLTKKFQSGWKA. 83
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g06457 82 ProSitePatterns LIM zinc-binding domain signature. 10 44 IPR001781 -
Seca12g06457 82 FunFam LIM domain and actin-binding 1 4 74 - -
Seca12g06457 82 PANTHER OS06G0237300 PROTEIN 5 77 - -
Seca12g06457 82 ProSiteProfiles LIM domain profile. 8 68 IPR001781 -
Seca12g06457 82 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 3 35 - -
Seca12g06457 82 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 36 76 - -
Seca12g06457 82 CDD LIM1_SF3 6 68 - -
Seca12g06457 82 Gene3D Cysteine Rich Protein 4 74 - -
Seca12g06457 82 SMART lim_4 9 61 IPR001781 -
Seca12g06457 82 Pfam LIM domain 10 65 IPR001781 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g06457 Seca-Chr12 156613550 156615374 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Seca12g06457 LIM 1e-11 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g06457 - K24413 mnt:21407059 155.221