Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g06454 ATGTGGATCATTTGGGAACGGCGCAAGGTACTGTCGGAGCTCGCCTGCTCCTTGAAGGTGGTTCGCAACATGGGCGGTGGTCCTCGGACGTTTCCCGGCGGAGTGAGCAAGTGGAAGTGGAAACGCATGCACGAGAAGCGAGCCAGAGACAAACAGAGAAGGCTTCTCGACCAAGAGAAGCAGCTCTACCAGGCTCGAATTCGCTCCCAAATACGCTCCTCCCTCTCTCCCTCTCCCTCTCCTTCTCCTTCTTCCTCCACCCACCGCCCCCTCACCCCCCGCGATCACATCAAAGCCCTCGCTGATCGATTCATGAAAGAAGGCGCCCAAGATCTCTGGAACAACCACGATGGTCCCCTAACCCAAGCCCAAGCCCAAGCCCAACCGCAGGTGAATTTACGCAAACTCATACCGAATCGGAATTTGACGAATTATACACAGACTAGGGATTACCGTTCTGTTCCTGAGGTTAGAAATAAGGACGATGGACATCGTCGTGTCAGCACCAACAAGGGCAGAATTTGGAGAAACCGTAGGTATGGGTCTTCCACTGAGAGTGACTGTGAGAGTGAGAATGAAATGGAATCTCAGGGTCACTATTCTAAGATCGGTAGTATTGCTTCTTTGGGGAAATATGATGTGAAGAGGGAAAGGAGGGTGATGCCCAAGTCCTATGATGAGGAAACTGATTTCTCGGAGCAGGTTGAATTGATCAAGTATCAGATTCATAAGAGGAAGTTAAGCCAAAATGAGGAACAAGAACAACAAAACATCCTGAGTCAAACAAGATTTGATGAGTGCGGTATATCACCATTGACAGTCAAGGCACTTTCTTCAGCTGGTTACATTCATTTGACCCGGGTGCAAGAGGCTAGCCTCCCTATTTGCCTAGAGGGTATGGATGCTTTGGTCAAAGCTAAAACTGGCACTGGAAAAAGTGCAGCTTTTTTGGTACACCCTAGTTCTTTTAACGTACTGCATCTTATTTTGTTTCTTTCTATCAATGATGCTAAATGCAAACAGCTTCCTGCTATTGAAACAGTTCTGAAAGCTATGAGTAGCAATACCTCTCAACGTGTGCCTCCAATACTTGTTCTTATTCTCTGCCCTACCAGAGAACTTGCTAGTCAAATTGCTGCTGAAGCAAAGGTTCTACTGAGATGTCATGATGGAATTGGGGTGCAGACACTAGTAGGAGGTGTACGATTTAAAGTCGATCAAAAACGCCTTGAATCAGATCCATGCCAGATACTTGTGGCTACACCTGGTAGGTTGCTGGATCACATTGAGAATAAGTCTGGAATATCTGTACGATTAATGGGCTTGCAGATGCTTGTACTTGATGAAGCTGATCATTTACTGGACCTGGGGTTTCGAAAGGATATAGAAAATATCATTGATTGTTTGCCCCGTCAAAGGCAGTCCTTGCTGTTTTCTGCAACCATCCCAAAGGAGGTCCGTCGAATATCTCAGCTTGCTTTGAAAAGGGAACACAAATATGTTGATACAGTTGGAGTGGGTTGTGTGGAAACTCCTGTTCAGGTAAAGCAATCTTATCTTATTGCTCCACATGAATCTCATTTTCAAGTAGTACATCATATTTTGAAGGAACATGTCTTGCAAACACCTGATTATAAGGTTATTGTTTTCTGTATTACTGGGATGGTAACATCACTCATGTATCACCTTCTTCGGGAAATGAAAATGAATGTCAGGGAGATACATTCTCGAAAACCTCAGCTCTATAGAACTCGCATATCAGATGAGTTCAGGGAATCCAAACAAATGATTCTTGTCTCATCTGATGTTTCATCACGTGGAATGAATTATCCTGATGTTACTTTAGTCATACAGGTGGGAATTCCATCAGACCGTGAACAATATATACATCGTCTAGGAAGAACAGGACGGGAAGGTAAAGAAGGGGAAGGCATATTATTGGTTGCTCCATGGGAAGAGTATTTTTTAAATGAAATCAAGGATCTCCCTCTAAAGAAATCCCCCTTACCAGAAATAGATCCACAGATAAAGCTTAAGATTGAGCATTCAATGGCGAAGATTGATAATGACATCAAAGAAGCAGCTTATCATGCTTGGCTTGGTTATTATAACTCCATCAGGGAAATTGGGAGGGAAAAGACCACTATAGCTGATCTGGCAAACCGATTTTCTGAATCAATTGGTTTACAGAGGCCTCCTGCTCTCTTCCGAAAAACTGCACTTAAAATGGGTTTGAAAGACATTCCTGGCATTAGAATTCGTAGATAG 2268 0.4405 MWIIWERRKVLSELACSLKVVRNMGGGPRTFPGGVSKWKWKRMHEKRARDKQRRLLDQEKQLYQARIRSQIRSSLSPSPSPSPSSSTHRPLTPRDHIKALADRFMKEGAQDLWNNHDGPLTQAQAQAQPQVNLRKLIPNRNLTNYTQTRDYRSVPEVRNKDDGHRRVSTNKGRIWRNRRYGSSTESDCESENEMESQGHYSKIGSIASLGKYDVKRERRVMPKSYDEETDFSEQVELIKYQIHKRKLSQNEEQEQQNILSQTRFDECGISPLTVKALSSAGYIHLTRVQEASLPICLEGMDALVKAKTGTGKSAAFLVHPSSFNVLHLILFLSINDAKCKQLPAIETVLKAMSSNTSQRVPPILVLILCPTRELASQIAAEAKVLLRCHDGIGVQTLVGGVRFKVDQKRLESDPCQILVATPGRLLDHIENKSGISVRLMGLQMLVLDEADHLLDLGFRKDIENIIDCLPRQRQSLLFSATIPKEVRRISQLALKREHKYVDTVGVGCVETPVQVKQSYLIAPHESHFQVVHHILKEHVLQTPDYKVIVFCITGMVTSLMYHLLREMKMNVREIHSRKPQLYRTRISDEFRESKQMILVSSDVSSRGMNYPDVTLVIQVGIPSDREQYIHRLGRTGREGKEGEGILLVAPWEEYFLNEIKDLPLKKSPLPEIDPQIKLKIEHSMAKIDNDIKEAAYHAWLGYYNSIREIGREKTTIADLANRFSESIGLQRPPALFRKTALKMGLKDIPGIRIRR. 756
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g06454 755 Gene3D - 239 502 IPR027417 -
Seca12g06454 755 Pfam DEAD/DEAH box helicase 286 488 IPR011545 GO:0003676|GO:0005524
Seca12g06454 755 Coils Coil 41 61 - -
Seca12g06454 755 PANTHER RNA HELICASE 227 684 - -
Seca12g06454 755 MobiDBLite consensus disorder prediction 123 152 - -
Seca12g06454 755 SMART ultradead3 281 516 IPR014001 -
Seca12g06454 755 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 293 500 IPR014001 -
Seca12g06454 755 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 363 657 IPR027417 -
Seca12g06454 755 MobiDBLite consensus disorder prediction 123 153 - -
Seca12g06454 755 Pfam Helicase conserved C-terminal domain 533 638 IPR001650 -
Seca12g06454 755 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 534 680 IPR001650 -
Seca12g06454 755 MobiDBLite consensus disorder prediction 68 93 - -
Seca12g06454 755 Gene3D - 510 734 IPR027417 -
Seca12g06454 755 MobiDBLite consensus disorder prediction 68 90 - -
Seca12g06454 755 CDD SF2_C_DEAD 515 648 - -
Seca12g06454 755 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 262 290 IPR014014 GO:0003724
Seca12g06454 755 SMART helicmild6 558 639 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g06454 Seca-Chr12 156591467 156595579 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g06454 262 669 Eukaryotic Initiation Factors Gene Family AT3G19760 26.555 1.33e-38 146
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g06454 - - gmx:100808520 1063.52