Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g06446 ATGCCTCAGGGAAGCCTTGAAGTTTTTCTTGTCAGTGCCAAGGGCCTTGAGAATACCGATTATCTTTGTAACATGGATCCTTATGTGATCCTCATGTGTCGCACTCAGGAGCAAAAAAGCAGTGTTGCGACAGGTAAAGGAAGTGATCCAGAATGGAATGAGAATTTTGTATTCAACGTGTCTGAAGGCGTTTCTGAACTCAAATTGAAGATCATGGACAGTGATAGCGGAACGGCTGATGATCTTGTTGGAGAAGCTACCATTTCACTAGACACATTGTTTATCGAAGGAAGCATCCCACCCACAGCATACAATGTTGTCAAGGATGGCCACTACTGTGGAGAAATTAGAATTGGCCTCACTTTTAAGCGTGAGGACCGCAGCGAACGGCAACTGGAACTGGAACTGGAAAGTTTTGGTGGGTGGAAGGAGTCTGCTCGTTACTGA 447 0.4541 MPQGSLEVFLVSAKGLENTDYLCNMDPYVILMCRTQEQKSSVATGKGSDPEWNENFVFNVSEGVSELKLKIMDSDSGTADDLVGEATISLDTLFIEGSIPPTAYNVVKDGHYCGEIRIGLTFKREDRSERQLELELESFGGWKESARY. 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g06446 148 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 2 123 IPR035892 -
Seca12g06446 148 PANTHER C2 DOMAIN-CONTAINING 1 126 - -
Seca12g06446 148 Pfam C2 domain 4 94 IPR000008 -
Seca12g06446 148 SMART C2_3c 5 102 IPR000008 -
Seca12g06446 148 ProSiteProfiles C2 domain profile. 1 103 IPR000008 -
Seca12g06446 148 Gene3D C2 domain 2 124 IPR035892 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g06446 Seca-Chr12 156550595 156551995 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g06446 4 128 C2H2 Transcription Factor Family AT4G21160 28.800 1.37e-10 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g06446 - - gmx:100782974 245.358