LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca12g06434	ATGGACTGGAATTTGAAAGCACCTTCTTGGGATTTAACTGAAGTGGATCAGGCAACGTTACCCAACATAGAAACAATGGATGGTTTAAGCAGATTTGGAGCTTATAGAACCAAAGGGGAATTTTCTGTTGACTTGAAGCTTGGCCAGGTGGGGAATTCTAGCACAGAATCAGTGCTGACCAAGTCCAACAAAGATGCTGGTGGAGTCTCCAAAATGACATCTTCAGGGTCATCTAAGAGAGCTCGAGCCATAAACAACGGGACACAGAGAGTGTCATGCCTTGTGGATGGGTGCCAATCAGATCTTAGTACCTGCAGGGACTATCATAGGCGCCATAAGGTCTGTGAAATCCATTCCAAGACAGCGCAGGTCACAATTGGTGGCCACAAGCAAAGGTTCTGCCAGCAGTGTAGCAGGTTCCATTCACTAGAGGAATTTGATGAAGGAAAAAGAAGCTGCAGGAAACGCTTAGATGGGCACAACCGACGGAGAAGAAAGCCCCAACCAGAACCTCTCACGCGTTCTGGTAGTTTTTTGTCCAATTACCAAGGCACCCAATTGCTACCCTTCTCAAGTTCACATGTGTACCCTACCACTGCTATGGTGAATCCTGCTTGGGGTGGAGGAGTTGTTACTTCCTGTGCAGATGTGAGGCTTCATAGCCACAACCAACACCAACAAATGCATTTGGTTGATAAACAAGACCTTTTTCTTGGATCTTCTCCAACAAGCTATAAAGAAGGGAAGCAATTGGCATTCATACAAGGTGACCAGCCCATGCCCACTCTCAGCAACCAAAGCCCACATCTTCCAGCTGCTGCTTCCATGAGGCCCAGCCCATTTTCAGAAAGCAACGGGCTGAGATGCAAATTATTCTGTGATAGCCTAACAAGTTCAGTCCATGACTCTTCTTGTGCTCTCTCTCTTCTGTCATCACCACAGACGCACAATCCTGGAAATGGATTAAACCAGATGGTGAATCCTCACACATCTTTTATGCAACCTTTAGGCCTGAGCCTGCATGATAACAGCTTGGGGTCAGTGAACCAAGTTTTGGGTCCTAACGAGAGTGACCATTGTGCCTCAATGTATAACATAGGTTCTAATAATGAATCCCCAGGGAATGAAGCCCCTCCACTATTTCCCTTTCAATGGGAATAG	1161	0.4643	MDWNLKAPSWDLTEVDQATLPNIETMDGLSRFGAYRTKGEFSVDLKLGQVGNSSTESVLTKSNKDAGGVSKMTSSGSSKRARAINNGTQRVSCLVDGCQSDLSTCRDYHRRHKVCEIHSKTAQVTIGGHKQRFCQQCSRFHSLEEFDEGKRSCRKRLDGHNRRRRKPQPEPLTRSGSFLSNYQGTQLLPFSSSHVYPTTAMVNPAWGGGVVTSCADVRLHSHNQHQQMHLVDKQDLFLGSSPTSYKEGKQLAFIQGDQPMPTLSNQSPHLPAAASMRPSPFSESNGLRCKLFCDSLTSSVHDSSCALSLLSSPQTHNPGNGLNQMVNPHTSFMQPLGLSLHDNSLGSVNQVLGPNESDHCASMYNIGSNNESPGNEAPPLFPFQWE.	387

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Seca12g06434	386	FunFam	Squamosa promoter-binding-like protein 14	84	154	-	-
Seca12g06434	386	ProSiteProfiles	Zinc finger SBP-type profile.	90	167	IPR004333	GO:0003677
Seca12g06434	386	MobiDBLite	consensus disorder prediction	56	82	-	-
Seca12g06434	386	Gene3D	-	84	154	IPR036893	GO:0003677\|GO:0005634
Seca12g06434	386	SUPERFAMILY	SBT domain	91	172	IPR036893	GO:0003677\|GO:0005634
Seca12g06434	386	PANTHER	SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4	59	362	IPR044817	GO:0003677
Seca12g06434	386	Pfam	SBP domain	93	166	IPR004333	GO:0003677
Seca12g06434	386	MobiDBLite	consensus disorder prediction	157	178	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca12g06434	Seca-Chr12	156426842	156429603	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca12g06434	1	386	SBP-box Gene Family	AT5G50670	43.325	4.02e-83	256

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	SBP	Seca12g06434		SBP	4.7e-30	No_clan

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca12g06434	-		-	gmx:100806507	599.742

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Seca12g06434	12	156426842	156429603	Seca12g06434	12	156426842	156429603	ECH
	Seca12g06434	12	156426842	156429603	Seca4g01734	4	28113234	28117052	PCT

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