Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g06434 ATGGACTGGAATTTGAAAGCACCTTCTTGGGATTTAACTGAAGTGGATCAGGCAACGTTACCCAACATAGAAACAATGGATGGTTTAAGCAGATTTGGAGCTTATAGAACCAAAGGGGAATTTTCTGTTGACTTGAAGCTTGGCCAGGTGGGGAATTCTAGCACAGAATCAGTGCTGACCAAGTCCAACAAAGATGCTGGTGGAGTCTCCAAAATGACATCTTCAGGGTCATCTAAGAGAGCTCGAGCCATAAACAACGGGACACAGAGAGTGTCATGCCTTGTGGATGGGTGCCAATCAGATCTTAGTACCTGCAGGGACTATCATAGGCGCCATAAGGTCTGTGAAATCCATTCCAAGACAGCGCAGGTCACAATTGGTGGCCACAAGCAAAGGTTCTGCCAGCAGTGTAGCAGGTTCCATTCACTAGAGGAATTTGATGAAGGAAAAAGAAGCTGCAGGAAACGCTTAGATGGGCACAACCGACGGAGAAGAAAGCCCCAACCAGAACCTCTCACGCGTTCTGGTAGTTTTTTGTCCAATTACCAAGGCACCCAATTGCTACCCTTCTCAAGTTCACATGTGTACCCTACCACTGCTATGGTGAATCCTGCTTGGGGTGGAGGAGTTGTTACTTCCTGTGCAGATGTGAGGCTTCATAGCCACAACCAACACCAACAAATGCATTTGGTTGATAAACAAGACCTTTTTCTTGGATCTTCTCCAACAAGCTATAAAGAAGGGAAGCAATTGGCATTCATACAAGGTGACCAGCCCATGCCCACTCTCAGCAACCAAAGCCCACATCTTCCAGCTGCTGCTTCCATGAGGCCCAGCCCATTTTCAGAAAGCAACGGGCTGAGATGCAAATTATTCTGTGATAGCCTAACAAGTTCAGTCCATGACTCTTCTTGTGCTCTCTCTCTTCTGTCATCACCACAGACGCACAATCCTGGAAATGGATTAAACCAGATGGTGAATCCTCACACATCTTTTATGCAACCTTTAGGCCTGAGCCTGCATGATAACAGCTTGGGGTCAGTGAACCAAGTTTTGGGTCCTAACGAGAGTGACCATTGTGCCTCAATGTATAACATAGGTTCTAATAATGAATCCCCAGGGAATGAAGCCCCTCCACTATTTCCCTTTCAATGGGAATAG 1161 0.4643 MDWNLKAPSWDLTEVDQATLPNIETMDGLSRFGAYRTKGEFSVDLKLGQVGNSSTESVLTKSNKDAGGVSKMTSSGSSKRARAINNGTQRVSCLVDGCQSDLSTCRDYHRRHKVCEIHSKTAQVTIGGHKQRFCQQCSRFHSLEEFDEGKRSCRKRLDGHNRRRRKPQPEPLTRSGSFLSNYQGTQLLPFSSSHVYPTTAMVNPAWGGGVVTSCADVRLHSHNQHQQMHLVDKQDLFLGSSPTSYKEGKQLAFIQGDQPMPTLSNQSPHLPAAASMRPSPFSESNGLRCKLFCDSLTSSVHDSSCALSLLSSPQTHNPGNGLNQMVNPHTSFMQPLGLSLHDNSLGSVNQVLGPNESDHCASMYNIGSNNESPGNEAPPLFPFQWE. 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g06434 386 FunFam Squamosa promoter-binding-like protein 14 84 154 - -
Seca12g06434 386 ProSiteProfiles Zinc finger SBP-type profile. 90 167 IPR004333 GO:0003677
Seca12g06434 386 MobiDBLite consensus disorder prediction 56 82 - -
Seca12g06434 386 Gene3D - 84 154 IPR036893 GO:0003677|GO:0005634
Seca12g06434 386 SUPERFAMILY SBT domain 91 172 IPR036893 GO:0003677|GO:0005634
Seca12g06434 386 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 59 362 IPR044817 GO:0003677
Seca12g06434 386 Pfam SBP domain 93 166 IPR004333 GO:0003677
Seca12g06434 386 MobiDBLite consensus disorder prediction 157 178 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g06434 Seca-Chr12 156426842 156429603 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g06434 1 386 SBP-box Gene Family AT5G50670 43.325 4.02e-83 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Seca12g06434 SBP 4.7e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g06434 - - gmx:100806507 599.742
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g06434 12 156426842 156429603 Seca12g06434 12 156426842 156429603 ECH
Seca12g06434 12 156426842 156429603 Seca4g01734 4 28113234 28117052 PCT