Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g06428 ATGACTTATGCCTTAGCCATCTATACCACTGCTAACTCTGTTATGACTAAATCAATGGAGAAACATCAAGTGTTATTCCCTGTCTTATCTTCATCAACAGCTTCTAGTTCTTCATCTGATTTTAAAGTTGTTGGTCATAGCTCTAATGCTAATGTTAAAAAGGCAGATTTTTTAAGAACTCAGAGGAAGGACATATCCATTGCAAGAAAAAAAGGTTGCAAGAAAATCATGCAACACAGATATGTATTTCAAACAAGGAGTCAGATTGATATACTGGATGATGGGTACCGGTGGAGAAAGTATGGTGAAAAGTCGGTCAAAAACAATAAATTCCCTAGGGAGTTATTACAGATGCTCTTATGGAGGCTGCAATGTAAAGAAACAAATCCAACGCCATTCCAAAGACGAGCAGATCGTAGTAACAACCTATGA 432 0.3704 MTYALAIYTTANSVMTKSMEKHQVLFPVLSSSTASSSSSDFKVVGHSSNANVKKADFLRTQRKDISIARKKGCKKIMQHRYVFQTRSQIDILDDGYRWRKYGEKSVKNNKFPRELLQMLLWRLQCKETNPTPFQRRADRSNNL. 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g06428 143 SUPERFAMILY WRKY DNA-binding domain 84 114 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca12g06428 143 Pfam WRKY DNA -binding domain 93 114 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca12g06428 143 SMART WRKY_cls 92 136 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca12g06428 143 ProSiteProfiles WRKY domain profile. 87 143 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca12g06428 143 Gene3D WRKY domain 79 142 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca12g06428 143 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 34 113 IPR044810 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g06428 Seca-Chr12 156356526 156358015 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g06428 58 113 WRKY Transcription Factor Family AT5G13080 56.250 2.53e-18 74.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Seca12g06428 WRKY 1.4e-07 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g06428 - - gmx:100127378 120.553