Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g06421 ATGGCAAAGAAGATGGATGTAAAGCTAGGAGAACCAACTGTGGTTTTGCCTGCAGAAGAAACAAAAAAGGGTCTCTACTTCCTTTCAAATCTAGACCAGAATATAGCATATCCAGTTCGTACTGTTTACTTTTATAAGTCAGCTTCTAGAGGTAATGAGGATGTTGCACAAGTCATCAAGGATTCCTTATCAAAGATTCTTGTTCACTATTTCCCTATGGCGGGTAGATTGACAATAAGCTCAGAAGGGAAACTGATAGTTGACTGCACAGAGGAGGGTGTTGTATTTGTTGAGGCTGAAGCAAACTGTATGATAGAGGACTTGGGAGATGTGTCAAAGGCAGACCTTGAAACTCTTGGAAAACTGGTCTATGATATCCCTGGTGCAAGGAACATACTCGAGATACCTCCTCTGTTAATTCAGGTGACAAAGTTTAAATGTGGAGGATTTGTTTTGGGAGTAAACGTGAATCATTGCATGAATGATGGTGTAAGTGCTATGCAGTTTGTGAACTCGTGGGGTGAGATAGCTAGAGGCATAGACTTGAAAATTCAACCATTTATGGACAGAACCATACTCAAAGCACGCAACCCTCCTAAAATAGAGTTTCCACACCATGAATTTGCTACAATTGAAGATGTATCAGGTACTGACAAACTTTATGAGGAAGAGTTGCTTTACGGGTCTTTTTGTTTTGATCAGGACAAGCTGGAGATGCTCAAGAAAAAGGCCACAGAAGATGGTGTTATGAAAAAGTGTTCCACTTATGAAGCCCTATCAGCTTTTGTGTGGCGAGCTAGAACTGAAGCCTTAAGGATGCATCCTAATCAACAAGTGAAGCTACTTTTTGCTGTTGATGGAAGGTCTAGATTTGTGTCACCAATGCCAAAAGGGTACTTTGGCAATGCTATTGTGTTGTCAAATGCTCTGTGCAAGGCAGGTGAATTGTTAAAGAACCCATTATCATTTACAGTGGGATTGATTGACAAGGCAATTGACATGGTCACGGATAGTTACATGAGATCTGTTATTGACTATTTTGAAGTTAAAAGAACCAAACCTTCCTTAACAGCAACACTTTTGATTACAACATGGACTAGATTATCTTTCAATGATGCAGATTTCGGCTGGGGGAAGCCTCATTCCTTTGGTCCTGTAAACTTGCCAGAAAAGGAAGTCATTTTGTTTTTATCACATGGTGAAAATGGAAAAGGCATAAATGTGCTCTTGGGTTTGCCAGCTTCTGCCATGAAAAGATTTGAAGCACTAATGGAGATATGA 1281 0.4012 MAKKMDVKLGEPTVVLPAEETKKGLYFLSNLDQNIAYPVRTVYFYKSASRGNEDVAQVIKDSLSKILVHYFPMAGRLTISSEGKLIVDCTEEGVVFVEAEANCMIEDLGDVSKADLETLGKLVYDIPGARNILEIPPLLIQVTKFKCGGFVLGVNVNHCMNDGVSAMQFVNSWGEIARGIDLKIQPFMDRTILKARNPPKIEFPHHEFATIEDVSGTDKLYEEELLYGSFCFDQDKLEMLKKKATEDGVMKKCSTYEALSAFVWRARTEALRMHPNQQVKLLFAVDGRSRFVSPMPKGYFGNAIVLSNALCKAGELLKNPLSFTVGLIDKAIDMVTDSYMRSVIDYFEVKRTKPSLTATLLITTWTRLSFNDADFGWGKPHSFGPVNLPEKEVILFLSHGENGKGINVLLGLPASAMKRFEALMEI. 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g06421 426 FunFam Spermidine hydroxycinnamoyl transferase 5 208 - -
Seca12g06421 426 Gene3D - 217 425 IPR023213 -
Seca12g06421 426 FunFam Tryptamine hydroxycinnamoyl transferase 212 425 - -
Seca12g06421 426 Gene3D - 1 210 IPR023213 -
Seca12g06421 426 PANTHER TRICHOTHECENE 3-O-ACETYLTRANSFERASE 13 422 - -
Seca12g06421 426 Pfam Transferase family 7 425 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g06421 Seca-Chr12 156236245 156237675 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g06421 5 424 Monolignol Biosynthesis Gene Families AT5G48930 37.471 1.21e-93 287
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g06421 K15400 - gmx:100527026 681.789