Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g06409 ATGGAAAAGCTGAATTTTGTTAAAAATGGAGTGAGCAGACTGCCTCCTGGATTTCGTTTCCAGCCAACAGATGAAGAACTTGTCTTTCAGTACTTGAAATGTAAAGTCTTCTCATGCCCCTTGCCAGCTTCCATCATTCCTGAGATCAATGTCTCTAAGTACGATCCTTGGGATTTGCCAGGTTTAGGAAATTGTGATGAGCAAGAGAGGTACTTTTTCAGCTCAAAGGAAGCTAAATATCGAAATGGTAATCGCATGAACCGAACAACCAAATGTGGGTATTGGAAGGCAACAGGGTCAGACAAAAGAATATCATCTCCAATGTGTAATGGCATTGTGGGGATAAGAAAAACACTGGTTTTTTATGAAGGGAAATCTCCAAATGGCTCAAAAACTGATTGGGTTTTGCATGAATATCGCCTTGTTAGTGTAGAAACTAGTGCTTGCAACTCAACCCAAGTTTTGGGTTGGCAGAGCTATGTAAATGAGATAGGAGATTGGGTTCTGTGTCGCATAATGATGAAGAAAAGAAGTATAGAAAGTGATGGTAGCACCACTCATCATCATCATCACATGCATAGAAGGGCTCCTCCAAGATTGTTTGATTTCATGATGGTGAGCAAGACATGTTCTTCTACATCCTCTTCATGTTCAAGTTCAAGTAACATGATAGAGGTCTCTTCAAATGCACAAGACCATGAAGAAACAAGTACTGGATATGCTGATTTTTAA 732 0.3989 MEKLNFVKNGVSRLPPGFRFQPTDEELVFQYLKCKVFSCPLPASIIPEINVSKYDPWDLPGLGNCDEQERYFFSSKEAKYRNGNRMNRTTKCGYWKATGSDKRISSPMCNGIVGIRKTLVFYEGKSPNGSKTDWVLHEYRLVSVETSACNSTQVLGWQSYVNEIGDWVLCRIMMKKRSIESDGSTTHHHHHMHRRAPPRLFDFMMVSKTCSSTSSSCSSSSNMIEVSSNAQDHEETSTGYADF. 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g06409 243 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 13 218 - -
Seca12g06409 243 SUPERFAMILY NAC domain 10 175 IPR036093 GO:0003677|GO:0006355
Seca12g06409 243 Gene3D NAC domain 23 180 IPR036093 GO:0003677|GO:0006355
Seca12g06409 243 ProSiteProfiles NAC domain profile. 14 175 IPR003441 GO:0003677|GO:0006355
Seca12g06409 243 Pfam No apical meristem (NAM) protein 15 141 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g06409 Seca-Chr12 156110690 156111830 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g06409 1 178 NAC Transcription Factor Family AT5G13180 61.798 1.49e-71 217
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Seca12g06409 NAM 2.3e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g06409 - - gmx:100812015 363.614