Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g06407 ATGGGTTGCACGCTCGGAACGCCGGCGGGTGTCGGAGCTCGCCACCGTCGCCGGCGTAACACTGCTACTACTGACGGAGGTAATAATGCCGTTAGGGTTCCTGAGAGGCAGAGGACTCCCCATGCCGGTGAAATTCCGGCACCGGAGCGCCGGAAACCTCGATTCGCGGCGACCCAGCAGGGTTGGCCGCCGTGGTTGATGGACGTGGCCGGCGATGCAATCCGAGACTGGACTCCTCGCCGTGCCAACACTTTCGAGAAGCTTGCTAAGATTGGGCAAGGGACTTATAGCAATGTGTATAAAGCTAGAGACCTTGTTACTGGGAAGATAGTGGCTTTGAAGAAAGTTAGATTTGATAATTTGGAGGCAGAGAGTGTGAAGTTTATGGCCAGAGAGATTCTTGTTTTGAGGAGGCTTGATCACCCCAATGTTCTAAAGCTTGAGGGATTGGTTACTTCAAGAATATCATCGAGTCTTTACTTGGTTTTTGAGTACATGGAACACGATCTTGCTGGCCTTGCAGCTGGCCTTGGTGTCAAATTCTCTGAGCCTCAGGTTAAATGCTATATGAAGCAATTACTGTCTGGCCTTGAGCATTGCCACAGCCGAGGTGTATTGCACCGTGATATCAAGGGCTCCAATCTGCTTGTTGACAATGAAGGGATACTTAAAATTGCAGATTTTGGATTGGCAACTTTCTATGATTCTAAGCAAAAGCATCCCATGACTAGTAGAGTTGTGACCCTTTGGTATCGTCCCCCTGAGCTTCTTCTTGGGGCTACATTCTATGGTGTTGGCGTTGATCTTTGGAGTGCTGGCTGCATCTTGGCAGAGCTGCTTGCTGGAAAGCCAATTATGCCTGGACGAACAGAGGTTGAACAACTGCACAAAATATTTAAGTTATGTGGCTCTCCATCTGAGGAATATTGGAAAAAATATAGATTGCCAAATGCTACACTCTTTAAGCCACAGCAACTGTATAAAAGATGCATCCTAGAAACGTTCAAGGATTTCCCATCTTCTTCATTGCCTCTAATTGAAACTCTTCTTGCTATAGATCCTGATGACCGTGGCACTACCTCAGCTGCTCTGAATAATGAATTCTTTATCACTGAGCCCTGTGCTTGTGAACCGTCAAATTTACCAAAGTATCCTCCCACCAAAGAATTGGATGTAAAACTGAGAGATGAAGAAGCAAGAAGGCAAAAAGCTCTTAGTGGAAAAACTAATGCAGCTGATGGTGCCAGAAGAGTTAGAATACGTGAGCGTGGATGTGCCATTCCAGCCCCAGAAGCCAATGCAGAGATCCAAACAAACTTAGATCAGCGGTGGAGAGTTGTGACACATGCAAATGCAAAAAGTAGAAGTGAGAAATTTCCACCTCCTCATCAGGATGGAGCTGTTGGATATCCACTGGATGCATCACACAAAGGAACTGTTTCATTTGGAGCCACTGAAACTTCCTTTAGCTCAACCACTTCTAATTCAAAACCTTCTGGATCTGTTGGAAGTCATGCTTCAGCCAGCTCTTACAAAGGAAGGAAAACCAATAAAGCAGATTCCCAAACAGTATCCTCATGGAAATTTTTAAGTTCATTCAAGCCATCAACCGTTGGCCTTTCATTCAATTTATTATTTAGAAGCAAATAA 1650 0.4552 MGCTLGTPAGVGARHRRRRNTATTDGGNNAVRVPERQRTPHAGEIPAPERRKPRFAATQQGWPPWLMDVAGDAIRDWTPRRANTFEKLAKIGQGTYSNVYKARDLVTGKIVALKKVRFDNLEAESVKFMAREILVLRRLDHPNVLKLEGLVTSRISSSLYLVFEYMEHDLAGLAAGLGVKFSEPQVKCYMKQLLSGLEHCHSRGVLHRDIKGSNLLVDNEGILKIADFGLATFYDSKQKHPMTSRVVTLWYRPPELLLGATFYGVGVDLWSAGCILAELLAGKPIMPGRTEVEQLHKIFKLCGSPSEEYWKKYRLPNATLFKPQQLYKRCILETFKDFPSSSLPLIETLLAIDPDDRGTTSAALNNEFFITEPCACEPSNLPKYPPTKELDVKLRDEEARRQKALSGKTNAADGARRVRIRERGCAIPAPEANAEIQTNLDQRWRVVTHANAKSRSEKFPPPHQDGAVGYPLDASHKGTVSFGATETSFSSTTSNSKPSGSVGSHASASSYKGRKTNKADSQTVSSWKFLSSFKPSTVGLSFNLLFRSK. 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g06407 549 Gene3D Transferase(Phosphotransferase) domain 1 168 409 - -
Seca12g06407 549 Pfam Protein kinase domain 85 369 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g06407 549 PANTHER CELL DIVISION PROTEIN KINASE 83 375 - -
Seca12g06407 549 FunFam probable serine/threonine-protein kinase At1g54610 72 167 - -
Seca12g06407 549 SUPERFAMILY Protein kinase-like (PK-like) 78 373 IPR011009 -
Seca12g06407 549 ProSiteProfiles Protein kinase domain profile. 85 369 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g06407 549 MobiDBLite consensus disorder prediction 451 472 - -
Seca12g06407 549 MobiDBLite consensus disorder prediction 37 51 - -
Seca12g06407 549 Gene3D Phosphorylase Kinase; domain 1 71 167 - -
Seca12g06407 549 ProSitePatterns Protein kinases ATP-binding region signature. 91 114 IPR017441 GO:0005524
Seca12g06407 549 MobiDBLite consensus disorder prediction 485 520 - -
Seca12g06407 549 ProSitePatterns Serine/Threonine protein kinases active-site signature. 205 217 IPR008271 GO:0004672|GO:0006468
Seca12g06407 549 SMART serkin_6 85 369 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g06407 549 MobiDBLite consensus disorder prediction 1 55 - -
Seca12g06407 549 CDD STKc_CDK9_like 85 369 - -
Seca12g06407 549 FunFam probable serine/threonine-protein kinase At1g54610 168 409 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g06407 Seca-Chr12 156098614 156103213 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g06407 77 403 Core Cell Cycle Gene Families AT5G10270 50.000 9.83e-114 345
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Seca12g06407 Pkinase 4.8e-67 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g06407 K08819 - gmx:100789359 897.886