Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g06406 ATGGATGATGGCCGCCAACATGAAAACGGTAGGCATAAAATGGAATACTATAGAGGAGCACATTCCCTGTGGAATACAGATCCTCAGCATCAAGTAAAGGAGCCAAATGCGTTAGTTATGAATAAGAAAATTAGGTCCATTATGGCGGAAAGACAGGCTGCCATTCTAGAACTTGAACTAGAGGCTGCCATATCTGAAAAGAATGAAGCCTTGGCTGCTCGAGATTTAGCCATTCGGCAGAGGGATGAAGCACTTGCTCAGAGGGATAATGCCCTGTTGGAACGGGATAATGCCCTTGCTGCCCTTCAAAATCGGATCAATGCTGTCAACTTCCCATTCAATGGCGGAATTCAACGTGGATCAAAGCGGATGCATCATTGTTCAAACAATCTATCCGACATGACAGAAGTTGCATACAGCACAAAGGATATGATAATAAGGGATGCTTCCCCAGTAACTGTTATAACTGCTGAAGCTGTCAAATCTCATCAAACTAAGAGAACAAAGGAGAACAAGGTAACTAATTCTAAGGCATCAAAGTCACCTAGTAAAGTAAAGAAAATTGGTGAGGATTTAAATAGGAAGGCCTCTTCTGAAGGGACTAAGATAAGATCTGAATGGGATAGGCAGGATGTTGGCTTGAATTTGGTTGCATTTGATGAAACTATCATGCCGGTACCAGTTTGCACATGCACTGGTGTCGCACGACAGTGCTACAAATGGGGCAATGGTGGATGGCAGTCATCTTGTTGTACCACCACATTGTCAGTGTATCCATTGCCACAGCTTCCAAACAAGCGCCATGCCCGCATTGGGGGGCGAAAGATGAGTGGAAGTGTCTTTACAAGACTTCTCAGTAAGCTGGCATCAGAAGGCCATGATTTATCTATACCATTGGATCTTAAGAACTACTGGGCCAGACATGGAACAAATCGCTACATCACTATCAAGTAG 954 0.4392 MDDGRQHENGRHKMEYYRGAHSLWNTDPQHQVKEPNALVMNKKIRSIMAERQAAILELELEAAISEKNEALAARDLAIRQRDEALAQRDNALLERDNALAALQNRINAVNFPFNGGIQRGSKRMHHCSNNLSDMTEVAYSTKDMIIRDASPVTVITAEAVKSHQTKRTKENKVTNSKASKSPSKVKKIGEDLNRKASSEGTKIRSEWDRQDVGLNLVAFDETIMPVPVCTCTGVARQCYKWGNGGWQSSCCTTTLSVYPLPQLPNKRHARIGGRKMSGSVFTRLLSKLASEGHDLSIPLDLKNYWARHGTNRYITIK. 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g06406 317 SMART GAGA_bind_2 1 317 IPR010409 -
Seca12g06406 317 Pfam GAGA binding protein-like family 1 317 IPR010409 -
Seca12g06406 317 PANTHER - 1 317 IPR010409 -
Seca12g06406 317 MobiDBLite consensus disorder prediction 183 201 - -
Seca12g06406 317 MobiDBLite consensus disorder prediction 162 201 - -
Seca12g06406 317 Coils Coil 53 73 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g06406 Seca-Chr12 156089576 156095242 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g06406 1 317 BBR or BPC Transcription factor family AT2G21240 57.994 7.49e-129 367
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF BBR-BPC Seca12g06406 GAGA_bind 1.5e-99 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g06406 - - gmx:100813103 561.607