Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g06402 ATGGCAGCTTTTTCATACCAACACCATCCCTTTCTTGTTGACTCTGCATGCTTCCCCAATACTCCCATTGACATGTCTTCTTTTGTGGAGCAACCCCATATAAACACTTCCCTTCCTCCTCACCACATTCATCAGGACAAGACATTTAGTGCCACAAATCAGGAAATTAGCTGTGTTGATCAAAGCTCCAAGATCACCATCAGTGACACAGAGCTCTCTGTGGTAAAAAACCAGAGTCCTGAGACTTCCATGGTAGTGGACAAGCTTGAAAACGGTGAACAGGTCACTCAGAAGATGACTCCTATGGAGAAGAAGAGAAAAGCCAGAAATAGATCTTCCTTGAGTACCCCCCTTTCTAAGGACTCAACAGAAGGGGGAAAGAAGAAGCAAAAGAAGAGCAATGGTGGGGTGAAAGGAGAGGAAAAGCCAAAAGAAGAGAAGAAAGAACAGAAAAAAGGTTCTGAAGAGCCTCCAACAGGCTATATCCACGTCAGAGCAAGAAGGGGTCAAGCAACAGATAGCCACAGCCTTGCTGAAAGGGTGAGAAGAGAGAAAATAAGTGAAAGGATGAAGACTTTGCAGCGACTTGTGCCAGGCTGTGATAAGGTAACGGGAAAGGCCCTTGTGTTAGACGAAATAATCAATTATGTTCAGTCCTTACAGAATCAAGTGGAGTTTTTGTCTATGAAACTTGCTTCCGTGAATCCCATGTTCTTTGACTTTGCAATGGACCTAGACACCCTCTTGGTTAGACCAGATCAGAAACTAAATAGCATAGCATCACCATCACCACTACCATGTGTGTCACTATGCAACCCCAACCAGGCTACAGCTTTTGCTGATACAACCACTCTGACCTCCACTTTCCCAGCTGCTAATAATGATTATCTTTTAGATTATTCATCTTCAGTTTTTCTTCAAGGACAGGGGTCAAATAATCTCTCCATGGAGTATACCGGTGGTTCGTTTTGGGACGCAGAAGACCAACGACAAAAGTTTCTTAATCCATATGGATTCGGCAACAATTCATGTTCCTTAAATTAA 1044 0.433 MAAFSYQHHPFLVDSACFPNTPIDMSSFVEQPHINTSLPPHHIHQDKTFSATNQEISCVDQSSKITISDTELSVVKNQSPETSMVVDKLENGEQVTQKMTPMEKKRKARNRSSLSTPLSKDSTEGGKKKQKKSNGGVKGEEKPKEEKKEQKKGSEEPPTGYIHVRARRGQATDSHSLAERVRREKISERMKTLQRLVPGCDKVTGKALVLDEIINYVQSLQNQVEFLSMKLASVNPMFFDFAMDLDTLLVRPDQKLNSIASPSPLPCVSLCNPNQATAFADTTTLTSTFPAANNDYLLDYSSSVFLQGQGSNNLSMEYTGGSFWDAEDQRQKFLNPYGFGNNSCSLN. 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g06402 347 Pfam Helix-loop-helix DNA-binding domain 174 221 IPR011598 GO:0046983
Seca12g06402 347 MobiDBLite consensus disorder prediction 83 178 - -
Seca12g06402 347 MobiDBLite consensus disorder prediction 83 98 - -
Seca12g06402 347 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 170 220 IPR011598 GO:0046983
Seca12g06402 347 FunFam Basic helix-loop-helix transcription factor 167 239 - -
Seca12g06402 347 CDD bHLH_AtBPE_like 160 245 - -
Seca12g06402 347 SMART finulus 176 226 IPR011598 GO:0046983
Seca12g06402 347 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 76 267 IPR024097 GO:0006355
Seca12g06402 347 Gene3D - 167 238 IPR036638 GO:0046983
Seca12g06402 347 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 168 236 IPR036638 GO:0046983
Seca12g06402 347 MobiDBLite consensus disorder prediction 122 178 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g06402 Seca-Chr12 156048172 156051300 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g06402 1 251 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G50915 47.656 4.78e-61 195
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca12g06402 HLH 3.3e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g06402 - - gmx:100790417 431.409
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g06402 12 156048172 156051300 Seca12g06402 12 156048172 156051300 ECH