Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g06394 ATGGCAACACAATCTGAACGCCTGGGCTACGAATTCGCCAAGTGGATGGGAATCCAAACTCCACAGGCTAGAGTAATTCACAATACCAGTTCAGAATGGCAACAAATAAAGGAAGCTGCAGAAAGAGCTAGAGACGCAGCAAATTTTGAGGGTGATGAAATTGGCGAAGTGACATGTTTTGAACTTTTGGAAGCACTTGAGCTTAGCCGATGTCTCTTTTTTATGAGCTATGTACATGGTTCACCTTTGCTTGAAAACTCTAGTGCATTTGAGTCACGGGATTCTGCAGAAAGAACAGCAGAAGCTCTTGGTAGGGTACTGATGCTGGACCTTGTCATCAGAAATGAAGATAGGCTCCCTTGCCGTGAGCTTAGATGGCGTGGGAATTCTGCAAATTTGTTGTTGGCTGAAAAGTTGATCTCTGCAAATACATATACACTAGAAGCAGCTTTTGATTCTGCAATTAATCGATATAGACCAAAGGTGATTAGGGCACTTCAAAAAGAAAGAAGGTCAACTTCAGTAGATAGCAGATTAAATTCTCATAATCCTGGCTTGATATCACAAGCCTCTGATCTTTCAGAGATTGCAGAATCACCAAGATCCACTGACACTAGCCTTAAAAGTCAAACATCAGGAGAAGCACTGTCTTCTGACCTTAACATTGTAGCCATTGATTCTGGTGTTCCTCGGCGACCCCCTGCTGGAAAACGTGCAAATGATCAGGTTAATTACCCTAAGTTGGTTGAGTTGCTGATCAATAGTTCTGAGTATGCCTCAAACCTCTTATATGATATAACTGGAGGGAAATTAGGATTTCCTCCACCAGAAGACATGGATACAACTGATGTACATGCAAGTGATATCACATCAATAGTTCATGCATTCCGTACTGGTTTCCGTGCTGCTCTTAGGGATCTGCAGGGATTCCATATATTCCTACTCACACTTCACCAAAGACTTGATACTTTGTTAAGATCATTTTTGAACATCATAAGCAAAATATCTTCAGGGGAATCTGACAAAGAGGATTCATTGGTTCCTGACTCACCTTCACTGGCTGCTGGTGGTAGTTGTTACTCTCCAACAAGTAAGGAGAGGCTTGCTAATGATAACCATCAAGACTTTACTGATTCAGAATCACAGAGAACTGCTTCAAAAGCATCCTCTTCAAGTAATAGAGATGGCTGTGACTCTACTCCTATGTCAAGAGAAAGTTGGCATGGAAAGTTCTATAAAGGAAATGGGGAGCCGCTTCGAAATCTCCGCTTAACAGCTAAGCTCCGTGACTTCCATAAATTTGCCAAGGTTGATGCTGAATCTAATAAGGAAATGGAACAGTGGAATGAAATGCTTAAAAATGATGCGATCAAGCTATGCCAGGAGAACAATTTCAATACAGGATTTTTCGAGGGTAGTGATAATAACAGTGTTGTTGATGCATATGAACTCAAGGTCAGACTTGAGCATATACTTGAGAGAATTGCACTGATATCTGAGGCTGCAAGTACAGAGAGACCATCAGCTGTTACAAGTACTCTATTCATCGGTGGAGCTCTGGCTGCAAGATCTGTATACACACTGCAATACTTGGGAATCACACATATTTTGTGTTTGTGTACCAATGAAATTGGACAATCTGAATCTCAGTTTCCTGATCTATTTGAGTACAAAAATTTCTCTGTGTGTGACAGTGAAGATTATAACATCAGCTGTATATTTGAAGAAGCGTGTGATTTTATAGATCATGTTGAACAAACAGGTCAGAAAGTTTTAGTTCATTGCTTTGAAGGGAGAAGCAGAAGTGCTACGTTGGTCCTTGCTTACTTAATGCTCAGGAAGAAGTACACTTTATTAGAAGCATGGCAAGCTCTGAAACGAGTTCACCGTCGAGCACAGCCCAATGATGGTTTTGCAAAGATCTTACAGGAACTGGATCAGAAACTACATGGGAAGGTTTCAATGGAGTGGCAGCAACGGAAACCAACTATGAAAATTTGCCCTATCTGTGGCAAAAACGCTGGACTAAGCAGCAGCTCACTTAAGTTGCATCTGCAGAAATCACATAGAAAGCTATCATCTGGGAGTGTAGATAGTGCCATGACAATGGAAATCCAGAAGGCATTAACTGCTTTGAAGATTAGCCGTGGTGGTAGTGTTAGCCCCACACAGAGGTCGTCTCATTCAATAATAGATCAATAG 2202 0.4133 MATQSERLGYEFAKWMGIQTPQARVIHNTSSEWQQIKEAAERARDAANFEGDEIGEVTCFELLEALELSRCLFFMSYVHGSPLLENSSAFESRDSAERTAEALGRVLMLDLVIRNEDRLPCRELRWRGNSANLLLAEKLISANTYTLEAAFDSAINRYRPKVIRALQKERRSTSVDSRLNSHNPGLISQASDLSEIAESPRSTDTSLKSQTSGEALSSDLNIVAIDSGVPRRPPAGKRANDQVNYPKLVELLINSSEYASNLLYDITGGKLGFPPPEDMDTTDVHASDITSIVHAFRTGFRAALRDLQGFHIFLLTLHQRLDTLLRSFLNIISKISSGESDKEDSLVPDSPSLAAGGSCYSPTSKERLANDNHQDFTDSESQRTASKASSSSNRDGCDSTPMSRESWHGKFYKGNGEPLRNLRLTAKLRDFHKFAKVDAESNKEMEQWNEMLKNDAIKLCQENNFNTGFFEGSDNNSVVDAYELKVRLEHILERIALISEAASTERPSAVTSTLFIGGALAARSVYTLQYLGITHILCLCTNEIGQSESQFPDLFEYKNFSVCDSEDYNISCIFEEACDFIDHVEQTGQKVLVHCFEGRSRSATLVLAYLMLRKKYTLLEAWQALKRVHRRAQPNDGFAKILQELDQKLHGKVSMEWQQRKPTMKICPICGKNAGLSSSSLKLHLQKSHRKLSSGSVDSAMTMEIQKALTALKISRGGSVSPTQRSSHSIIDQ. 734
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g06394 733 FunFam Dual specificity protein phosphatase PHS1 478 652 - -
Seca12g06394 733 ProSiteProfiles Dual specificity protein phosphatase domain profile. 506 651 IPR020422 GO:0006470|GO:0008138
Seca12g06394 733 ProSitePatterns Tyrosine specific protein phosphatases active site. 593 603 IPR016130 GO:0016311|GO:0016791
Seca12g06394 733 MobiDBLite consensus disorder prediction 173 214 - -
Seca12g06394 733 Pfam Dual specificity phosphatase, catalytic domain 522 647 IPR000340 GO:0008138|GO:0016311
Seca12g06394 733 CDD DSP 507 644 - -
Seca12g06394 733 MobiDBLite consensus disorder prediction 339 411 - -
Seca12g06394 733 PANTHER DUAL SPECIFICITY PROTEIN PHOSPHATASE PHS1 1 732 IPR035010 GO:0004721|GO:0009737|GO:0043622
Seca12g06394 733 Pfam Actin-fragmin kinase, catalytic 3 227 IPR015275 -
Seca12g06394 733 MobiDBLite consensus disorder prediction 381 400 - -
Seca12g06394 733 SUPERFAMILY Protein kinase-like (PK-like) 1 242 IPR011009 -
Seca12g06394 733 Gene3D - 83 229 IPR036940 -
Seca12g06394 733 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 506 651 IPR029021 -
Seca12g06394 733 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 575 627 IPR000387 GO:0016311|GO:0016791
Seca12g06394 733 Gene3D Protein tyrosine phosphatase superfamily 489 661 IPR029021 -
Seca12g06394 733 SMART dsp_5 506 648 IPR020422 GO:0006470|GO:0008138
Seca12g06394 733 MobiDBLite consensus disorder prediction 177 214 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g06394 Seca-Chr12 155959607 155965336 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g06394 1 717 Protein tyrosine phosphatase (PTP) family AT5G23720 66.483 0.0 962
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g06394 K14165 - gmx:100791993 1254.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g06394 12 155959607 155965336 Seca12g06394 12 155959607 155965336 ECH