Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g06392 ATGGCGACATCAGAGGTATCAATCAAGGGAAATTCGGTGAACGGAAAAGGAGAAAATAACAACAACGATGCTAGGAACGGTGCAGCAGAGGGTCAAAATGGTCCTTCATCGTCAACAGCGAGAGTTTTTCGTTTCACAGACGCGGAAGCTGCACTTTACAGGGAGCTATGGCATGCGTGTGCAGGTCCTCTTGTAACAGTTCCCAGAGAAGGAGAGCGCGTGTTCTATTTTCCTCAGGGACATATTGAGCAGGTGGAGGCGTCGACGAATCAGGTAGCGGAACAGCACATGCCAGTTTACGATCTTCCACCTAAGATCCTTTGTCGGGTCATCAACGTGATGCTGAAGGCTGAGCCAGATACAGATGAGGTGTTTGCTCAGGTGACCTTACTTCCGGAGCCAAATCAAGATGAGAATGCGGTGGAGAAAGAGGCTCCACCGGCTCCGCCACCACGATTTCATGTTCATTCATTTTGTAAAACGTTGACAGCGTCAGATACGAGTACCCACGGTGGGTTTTCAGTGCTGAGACGTCATGCTGATGAATGTCTCCCTCCCCTGGATATGTCAAAGCAACCACCTACCCAGGAATTGGTGGCCAAAGATCTGCATGCGAACGAGTGGCGATTCAGGCATATCTTTCGCGGTCAACCACGGAGGCACTTGCTGCAAAGTGGTTGGAGTGTTTTTGTCAGCTCTAAGAGGCTGGTAGCTGGGGATGCATTTATATTTCTAAGAGGTGAGAATGGGGAACTTCGAGTGGGTGTCAGGCGTGCAATGAGGCAGCAGGGTAATGTTCCATCGTCGGTCATCTCTAGCCACAGTATGCATCTCGGTGTCCTGGCAACTGCTTGGCATGCTATATTGACCGGGACCATGTTTACTGTTTATTACAAGCCTAGGACCAGTCCAGCTGAATTTATTGTTCCATGTGATCAATACATGGAGTCTCTAAAAAATAATTATACCATAGGTATGCGGTTCAAAATGAGGTTTGAAGGAGAAGAGGCTCCTGAGCAAAGGTTTACTGGCACCATTGTTGGAATTGAAGATGCTGACCCCAAAAGATGGCCGAAATCTAAATGGAGAAATCTGAAGGTTGTGAGATGGGATGAAACATCTAACATACCTCGGCCTGAGAGAGTTTCCCCATGGAAAATAGAGCATGCTCTTGCTCCTCCAGCTCTAAATCCTCTTCCTATGCCTAGGGCTAAAAGGCCTCGATCTAATGTGGTTCCATCATCCCCAGATTCTTCTGTTCTTACTCGAGAAGCAACATCTAAAGTAAGCATAGACCCTTTGCCAGCAAGTGGGTTTCCAAGGGTCTTGCAAGGTCAAGAACTGTCGACCTTGAGAGGTAATTTTACAGAAAGCAATGAGTCTGATAATGCAGAGAAGTCTGTTGTGTGGCAACCTGCAACAGATGATGAAAAGATTGATGCTGTTTCTGCTTCAAGAAGGTATGGATCAGAGAGCTGGATGTCAATGGCAAGGCATGAGCCAACGTATTCAGATCTTCTTTCAGGCTTTGGAGCCCATGGAGATCATTCTTCCCATCCATCCTTTGTTGAACAGACTGGTCCTGTAGCTATCCCTGGTAGGAAAAGTTTGTTGGATCGTGAAGGCAAACATAATGTGCTTAGTCCATGGCCTGTAATGCCGTCTAGTCTATCACTCAACCTCTTGGACTCTAATACAAAAGGTTCTGCACTAGGTGGTGACACAACTTATCAAGTTCAAGGGAATTTGAGGTATAGTGCATTTGGTGAATACTCTCTGCTTCATGGACATAAAGTTGAACATCCACATGGAAACTTTATGATGCCGCCACCACCTCCAAATCAATATGAGAGTCCTCATTCAAGAGAACTGTTGCCCAAACAAATATCAGCAAGAACTTGTGAGGTTGCAAAACCAAAAGATGGTGACTGTAAATTATTCGGCATCTCACTTCTCAGTAGCCCCATTGCACCAGGGCCATCTATGTCACAAAGAAATGTTGCAACTGAGCCAGTTAGTCACATGAATCTTACATCACAACATCAGACATTTGAAAATGATCACAAGTCACTGGCAGATGGTCCAGTTGTAGTTGATGACCATGAGAAGCTGTTACCGACTTCTCAGCCTCATCTTAAAGATGTTCAACTCAAACCTCATAATGGTTCTGCCAGAAGTTGCACTAAAGTTCACAAGAAAGGGATTGCACTTGGTAGGTCAGTGGACCTTACAAAGTTCAATGACTATGATGAATTAATTGCTGAATTGGATCAGCTCTTTGAATTTGGAGGTGAACTAAAATCTCCACAAAAGGATTGGCTTATTGTCTACACTGATAATGAGGGTGACATGATGCTTGTTGGTGATGATCCGTGGCAGGAGTTTTGTGCCATGGTCCGCAAAATTTATATCTACCCCAAAGAGGAGATTCAGAAAATGAGCCCGGGAACCTTAAGTTCAAAAAATGAAGAGAATCAGTCAGTTAGCGAAGGTGCAGATGCACAAGAAGTTAGATGTCAGTTGCATCATTCAGCTTCTGACGCCTGA 2547 0.4531 MATSEVSIKGNSVNGKGENNNNDARNGAAEGQNGPSSSTARVFRFTDAEAALYRELWHACAGPLVTVPREGERVFYFPQGHIEQVEASTNQVAEQHMPVYDLPPKILCRVINVMLKAEPDTDEVFAQVTLLPEPNQDENAVEKEAPPAPPPRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSKQPPTQELVAKDLHANEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAILTGTMFTVYYKPRTSPAEFIVPCDQYMESLKNNYTIGMRFKMRFEGEEAPEQRFTGTIVGIEDADPKRWPKSKWRNLKVVRWDETSNIPRPERVSPWKIEHALAPPALNPLPMPRAKRPRSNVVPSSPDSSVLTREATSKVSIDPLPASGFPRVLQGQELSTLRGNFTESNESDNAEKSVVWQPATDDEKIDAVSASRRYGSESWMSMARHEPTYSDLLSGFGAHGDHSSHPSFVEQTGPVAIPGRKSLLDREGKHNVLSPWPVMPSSLSLNLLDSNTKGSALGGDTTYQVQGNLRYSAFGEYSLLHGHKVEHPHGNFMMPPPPPNQYESPHSRELLPKQISARTCEVAKPKDGDCKLFGISLLSSPIAPGPSMSQRNVATEPVSHMNLTSQHQTFENDHKSLADGPVVVDDHEKLLPTSQPHLKDVQLKPHNGSARSCTKVHKKGIALGRSVDLTKFNDYDELIAELDQLFEFGGELKSPQKDWLIVYTDNEGDMMLVGDDPWQEFCAMVRKIYIYPKEEIQKMSPGTLSSKNEENQSVSEGADAQEVRCQLHHSASDA. 849
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g06392 848 MobiDBLite consensus disorder prediction 814 848 - -
Seca12g06392 848 Gene3D - 321 392 - -
Seca12g06392 848 ProSiteProfiles PB1 domain profile. 725 807 IPR000270 GO:0005515
Seca12g06392 848 Pfam AUX/IAA family 722 812 IPR033389 -
Seca12g06392 848 MobiDBLite consensus disorder prediction 814 833 - -
Seca12g06392 848 SUPERFAMILY CAD & PB1 domains 727 802 - -
Seca12g06392 848 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 51 814 IPR044835 GO:0003677|GO:0006355|GO:0009725
Seca12g06392 848 FunFam Auxin response factor 720 814 - -
Seca12g06392 848 FunFam Auxin response factor 156 260 - -
Seca12g06392 848 SUPERFAMILY DNA-binding pseudobarrel domain 154 287 IPR015300 -
Seca12g06392 848 Pfam B3 DNA binding domain 158 259 IPR003340 GO:0003677
Seca12g06392 848 MobiDBLite consensus disorder prediction 396 424 - -
Seca12g06392 848 CDD B3_DNA 156 258 IPR003340 GO:0003677
Seca12g06392 848 FunFam Auxin response factor 321 394 - -
Seca12g06392 848 Gene3D - 721 814 - -
Seca12g06392 848 Pfam Auxin response factor 284 366 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Seca12g06392 848 ProSiteProfiles B3 DNA-binding domain profile. 158 260 IPR003340 GO:0003677
Seca12g06392 848 SMART B3_2 158 260 IPR003340 GO:0003677
Seca12g06392 848 Gene3D - 155 260 IPR015300 -
Seca12g06392 848 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g06392 Seca-Chr12 155953496 155957517 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g06392 1 848 B3 DNA Binding Superfamily AT5G62000 65.446 0.0 1120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Seca12g06392 AUX_IAA 3.9e-11 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g06392 - - gmx:100815956 1399.8