Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g06390 ATGCATTTCGCAAATCTGGATGACACTCCCATGTTCCGCCAACAGCTCCAGTGCTTGGAGGAAAGTGCTGAATCATTGCGCACCAGATGCTTGAAGTTCTACAAAGGATCTCGAAAGTATACGGAAGGGCTTGGAGAGGCATATGATGGGGATATCGCATTTGTAAGTGCCCTTGAAAATTTTGGAGGAGGGAATGCTGATCCTCATTTTATTGCTTTGGGAGGACCTGTTATGATCAAATTTACTATTGCTTTGAGAGAAATTAGTACATACAAGGAACTTCTTCGGTCACAGGTAGAGCACATGTTCAATGACCGGTTACTACAAATTGTCAATGTTGACATCAATGAAGTCAAGGAAGCTCGTAAGCATTTTGACAAAGCTTCCCTTGTATATGACCAGGCTCGTGAAAAGTTTATGTCACTGAGAAAAAGCACTAAGATTGATATTGCCACTGTCATAGAAGAGGAAATGCAAAATGCAAGAACGTTGTTTGAGGAAGCCCGTTTCAATCTGGTTGGTGCTCTTAATAACATTGAGGTCAAGAAGAGATTTGAGTTTTTAGAGGTTGTCACTGGAGTTATGGATGCTCATCTTCGATACTTTCAACAGGGTTATCAGCTATTACATCAGATGGAACCTTTCATTAACGAGGTTTTGGATTATGTACAACAGTCAAGAGAAAGTTACAACAAGGAGCAGATTTCACTTTATAAAAGAATGCAAGACTACAAAAGACAAGTTTATGAAGAAAGTAGGTTGTCCTTGAATGGCCCTTATGGATCTCCTACTGGAGATTGCGTGCATCCTTTTCCTAAGATATCAAATGAAGTGGCAGATGTAGTAATGGAGTCTGCTGCAAATGGAAAGGTTCAAATCATTCGACAAGGATATCTTTCAAAACGATCCTCCAATTTGAGAGGTGACTGGAAAAGAAGGTATTTTGTTCTTGATAGTCGAGGAATGTTGTACTACTACCGCAAACCATGGAACCTGTCATATGGCAGCAATCAACTATCTCCAAGGAGGAATAGTGCCACTGAAAATGGTTCTGGGCTTCTGAGTCGATGGCTTTCTTCTCATTACCATGGAGGTGTCCACGATGAAAGATCTGTAGCACGTCATACAGTGAACCTGCTCACGTCAACAATCAAGGCTGATGCTGATGATCAGTCAGATTTAAGATTCTGCTTCAGGATTATTTCGCCATCCAAGAACTATACATTGCAGGCAGAAAATGCGGTGGACCAGATGGATTGGATGGAAAAGATAAATGGAGTAATTGCCTCCTTGTTGAGTGCCCAGACACTGGGAACGCCTACCTCAGCTGACTCAGAAAACAGTAACTCTTGCTCTGCCGATAAGAGTAATATGTTAGAAAATTCTCCAGATGATGATCGCACTATGACCGAGAAATCTGAATCCAAGAATTCCACCCCTACTAGCCACTTACGTTCATCTAGAAGTTTGCACTTGCATAATTACAGTATAAGAAGTGAAAAGCCAATTGATATTCTTAGAAGGGTGAGCGGAAATGACAAATGTGCTGATTGTGGGAAACCTGAACCAGACTGGGCATCCTTAAACCTCGGCATCCTTATATGCATTGAATGTTCTGGTGTTCATCGTAATCTTGGCGTACATATATCAAAAGTAAGATCACTGACACTTGATGTGAAAGTCTGGGATCCTTCTGTCTTAAGTATGTTTAAGTCACTTGGCAACCTTTTTGCAAACTCAGTTTGGGAGGAGCTGTTACATTCAACTAGTACTTTGCAAACCGATGACACCCCTGTTGGTTCATCCAAGGCAAACAGAGACAAGCTATCTCATGCAAGAAAACCGAAACATGATGATTCTATTTCATTAAAGGAGAAGTTCATTCACGCAAAGTATTCTGAGAAAATATTCATTCGCCGGACAAAGAAAGACCACCCGCTCCTTTCACTGGCAAAAAAGGTATTGGAAAGCATCTGTGCCAATGACAAAAAAGCAGTGTACGAGCATATTATCAAGTCAGATGCGGATGTCAATGCCATCGGTGGGAAAGCATTATCTGGTGACTGTTTCAACATGGCTTCTTCAAGTAGTTTAAAGTTAAACCTTCAATCGCAAACTGAAAATCAGTTGATTGAGGACATGGGAGATGGTTCTGGTGTGCTTCACTTGGCATGCCTAACTAGTGACGTTGGCATGGTGGAGCTGCTCCTACAGCACGGGGCAGATATAAATGCTTGTGATTCAAGAGGTCAGACACCGCTACATCGCTGCATTATCAGAGGGAAGACTGCAGCTGCAAAAGCGCTTATTATGAGGGGGGCCAATCCACATCTGGCAGATAAAGAAGGCAACACTCCTCTTAAGCTTGCATCAGAATCCGGCTCTGTTGACAAAGAAATTCTTGCTCTCATGGCTAGCAGATAA 2424 0.42 MHFANLDDTPMFRQQLQCLEESAESLRTRCLKFYKGSRKYTEGLGEAYDGDIAFVSALENFGGGNADPHFIALGGPVMIKFTIALREISTYKELLRSQVEHMFNDRLLQIVNVDINEVKEARKHFDKASLVYDQAREKFMSLRKSTKIDIATVIEEEMQNARTLFEEARFNLVGALNNIEVKKRFEFLEVVTGVMDAHLRYFQQGYQLLHQMEPFINEVLDYVQQSRESYNKEQISLYKRMQDYKRQVYEESRLSLNGPYGSPTGDCVHPFPKISNEVADVVMESAANGKVQIIRQGYLSKRSSNLRGDWKRRYFVLDSRGMLYYYRKPWNLSYGSNQLSPRRNSATENGSGLLSRWLSSHYHGGVHDERSVARHTVNLLTSTIKADADDQSDLRFCFRIISPSKNYTLQAENAVDQMDWMEKINGVIASLLSAQTLGTPTSADSENSNSCSADKSNMLENSPDDDRTMTEKSESKNSTPTSHLRSSRSLHLHNYSIRSEKPIDILRRVSGNDKCADCGKPEPDWASLNLGILICIECSGVHRNLGVHISKVRSLTLDVKVWDPSVLSMFKSLGNLFANSVWEELLHSTSTLQTDDTPVGSSKANRDKLSHARKPKHDDSISLKEKFIHAKYSEKIFIRRTKKDHPLLSLAKKVLESICANDKKAVYEHIIKSDADVNAIGGKALSGDCFNMASSSSLKLNLQSQTENQLIEDMGDGSGVLHLACLTSDVGMVELLLQHGADINACDSRGQTPLHRCIIRGKTAAAKALIMRGANPHLADKEGNTPLKLASESGSVDKEILALMASR. 808
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g06390 807 SUPERFAMILY BAR/IMD domain-like 6 315 IPR027267 -
Seca12g06390 807 Gene3D - 643 804 IPR036770 -
Seca12g06390 807 CDD PH_ACAP 295 433 - -
Seca12g06390 807 SMART PH_update 293 431 IPR001849 -
Seca12g06390 807 MobiDBLite consensus disorder prediction 459 473 - -
Seca12g06390 807 CDD ArfGap 503 632 - -
Seca12g06390 807 CDD BAR_SFC_plant 15 215 IPR035670 -
Seca12g06390 807 ProSiteProfiles Ankyrin repeat region circular profile. 716 747 - -
Seca12g06390 807 SUPERFAMILY Ankyrin repeat 655 797 IPR036770 -
Seca12g06390 807 SMART arf_gap_3 500 645 IPR001164 GO:0005096
Seca12g06390 807 Gene3D - 285 440 IPR011993 -
Seca12g06390 807 Pfam BAR domain of APPL family 6 233 IPR004148 GO:0005515|GO:0005737
Seca12g06390 807 SUPERFAMILY ArfGap/RecO-like zinc finger 500 640 IPR037278 -
Seca12g06390 807 ProSiteProfiles PH domain profile. 292 429 IPR001849 -
Seca12g06390 807 ProSiteProfiles Ankyrin repeat region circular profile. 749 781 - -
Seca12g06390 807 MobiDBLite consensus disorder prediction 438 488 - -
Seca12g06390 807 Pfam PH domain 294 428 IPR001849 -
Seca12g06390 807 FunFam ADP-ribosylation factor GTPase-activating protein AGD1 482 645 - -
Seca12g06390 807 PRINTS HIV Rev interacting protein signature 554 575 IPR001164 GO:0005096
Seca12g06390 807 PRINTS HIV Rev interacting protein signature 512 531 IPR001164 GO:0005096
Seca12g06390 807 PRINTS HIV Rev interacting protein signature 531 548 IPR001164 GO:0005096
Seca12g06390 807 ProSiteProfiles Ankyrin repeat profile. 749 781 IPR002110 GO:0005515
Seca12g06390 807 SUPERFAMILY PH domain-like 203 428 - -
Seca12g06390 807 PANTHER CENTAURIN/ARF 5 805 IPR045258 GO:0005096
Seca12g06390 807 SMART ANK_2a 749 778 IPR002110 GO:0005515
Seca12g06390 807 SMART ANK_2a 716 745 IPR002110 GO:0005515
Seca12g06390 807 Pfam Putative GTPase activating protein for Arf 503 639 IPR001164 GO:0005096
Seca12g06390 807 ProSiteProfiles ARF GTPase-activating proteins domain profile. 500 645 IPR001164 GO:0005096
Seca12g06390 807 MobiDBLite consensus disorder prediction 438 458 - -
Seca12g06390 807 MobiDBLite consensus disorder prediction 593 618 - -
Seca12g06390 807 Pfam Ankyrin repeats (many copies) 718 770 IPR002110 GO:0005515
Seca12g06390 807 Gene3D Arf GTPase activating protein 482 642 IPR038508 -
Seca12g06390 807 ProSiteProfiles Ankyrin repeat profile. 716 748 IPR002110 GO:0005515
Seca12g06390 807 SMART 5bar 5 218 IPR004148 GO:0005515|GO:0005737
Seca12g06390 807 Gene3D Arfaptin homology (AH) domain/BAR domain 4 250 IPR027267 -
Seca12g06390 807 MobiDBLite consensus disorder prediction 474 488 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g06390 Seca-Chr12 155897399 155910526 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g06390 504 661 C2H2 Transcription Factor Family AT4G21160 38.596 2.12e-22 97.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g06390 K12489 - gmx:100792517 1280.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g06390 12 155897399 155910526 Seca12g06390 12 155897399 155910526 ECH
Seca12g06390 12 155897399 155910526 Seca4g01785 4 29434934 29461928 PCT