Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g06386 ATGGCAACAAATTCAGAGAAAAATTGTGAAGGTGTTGCTGAGTCTCCAGCTTCTACTACTCCACTTGGAAAACAACCAACAGAGGGTGGTGACCCCAAAACTGAAAGAATCAAAGCCACAAGACACCCTCGATGGACCAGACAAGAAACACTTGTTCTCATAGAGGCCAAGAAACTGGTTGAAAATGGAGAACAGGTTTCAAGATACAGATCAGCATCTGGGTTAGTTCACACTGACCCAAAATGGGATTTGGTTTCATCATTGTGTCAGCAACATGGTGTCAATAGAGGGGCTGTTCAGTGCAGAAAAAGATGGGGCAACCTTCTAACTGACTTCAGGAAGATCAAGAAATGGGAATCAAATATAAAAGAGGAGGCAGAGTCATTTTGGATTATGAGAAATGATGTGAGGAAAGAAAAGAAATTGCCAGGGTTCTTTGATGCTGTGGTGTACAATGTGTTGGATGGAGGGGTATGCACTGCTGCTGCATTTCCGTTGACATTGATCAAAATGACACCAAAAGCAGATAATGTTGATCAAGTTGAAGCACTAATGGCGGCAGAGCAATGTAAGGAGGGTGAGGAGGAGGATGAGGAGGAAGATGAGGCCATTGTTGACAGTGAGAAAATGAGTTGGAGCACTGAAGAGGAAAACTATGACACAGTGACAAATGGGAATAAGGTCAATGGTCCATTGCAAACACCAAGTCCTAACAAAACAGGCATGAGAGGGTGTCTCAAAATGACACCAGTATTACTCACTCTGCCTAGTTCAGGCTGTCAGAGAGAAGCCATGTTCCAAGAGGGGTACAAGAGAAGGAGATCAGCATCAGACAATTGTGAAGACACCACAAATTTCAACGACAATGTTATCAAAGTGCTAAGGAGGAATAGCAACATACTGAAAGCCCACATTGGAGCTCAGAACGTGAATTACCAATTGGCCAGGGACCAGCAGAAGCAGCAAACAGACAGCTTAGTTACAGCACTTGGCAAGCTCACAGATGCTCTCACAAAAATTGCTGACAAGCTGTAA 1035 0.4377 MATNSEKNCEGVAESPASTTPLGKQPTEGGDPKTERIKATRHPRWTRQETLVLIEAKKLVENGEQVSRYRSASGLVHTDPKWDLVSSLCQQHGVNRGAVQCRKRWGNLLTDFRKIKKWESNIKEEAESFWIMRNDVRKEKKLPGFFDAVVYNVLDGGVCTAAAFPLTLIKMTPKADNVDQVEALMAAEQCKEGEEEDEEEDEAIVDSEKMSWSTEEENYDTVTNGNKVNGPLQTPSPNKTGMRGCLKMTPVLLTLPSSGCQREAMFQEGYKRRRSASDNCEDTTNFNDNVIKVLRRNSNILKAHIGAQNVNYQLARDQQKQQTDSLVTALGKLTDALTKIADKL. 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g06386 344 Pfam Myb/SANT-like DNA-binding domain 43 132 IPR044822 -
Seca12g06386 344 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASR3 18 344 - -
Seca12g06386 344 MobiDBLite consensus disorder prediction 190 243 - -
Seca12g06386 344 ProSiteProfiles Myb-like domain profile. 44 109 IPR001005 -
Seca12g06386 344 Gene3D - 45 114 - -
Seca12g06386 344 SMART sant 41 111 IPR001005 -
Seca12g06386 344 MobiDBLite consensus disorder prediction 191 205 - -
Seca12g06386 344 MobiDBLite consensus disorder prediction 1 39 - -
Seca12g06386 344 MobiDBLite consensus disorder prediction 216 240 - -
Seca12g06386 344 MobiDBLite consensus disorder prediction 1 25 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g06386 Seca-Chr12 155866271 155868528 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g06386 44 184 Trihelix Transcription Factor Family AT5G03680 24.324 5.10e-06 46.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Seca12g06386 Myb_DNA-bind_4 3.9e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g06386 - - tpra:123916032 491.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g06386 12 155866271 155868528 Seca12g06386 12 155866271 155868528 ECH