Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g06385 ATGCCTTTTCAAATCATGGATCAGAGGGGCGTTTCTGCCTCCTCCCACTTTTTTGATGACATTTCCTTTCATTCTGAGAGGAATGTTGGATTGCAGAAGCCAAAATACATTAATGATCAACACCCACAAGGAAAGAATGGAATGATAGCATCACCTGGCAGTATCATGAATGCTCCATCACCCCTTGAAGTAAATGCAAATTCTGGCTTGTCGATGTCTCAGACTAGTCTATCTGGGGAAAGTACAGTAAAGCTATATTTTGGTGGAGAAGAAGGCGTTGTCGATGTGTTGAAGGATTCCAAGGAGTCATCGCATTATCACCCCAAATCATGGTCTGATGCGTGTATGCCGTCAGCACCTACCTCATATGGTTTAATTGGGAAGAAGATTGTCACTTGTGCTGCCCCTTGTGAAAGTAGTCTATTCTCAAGCTCACTATCTGAGATATTTATCCAAAATTTGAGGTTATTTGGAAATGATGTTCTGTCTGAAGAGCCCATTACTGTTGATTACCTTCCTGAGGATGAACCATATAAATCTCTTGAGGAGATGGAGGCTGACACTATAGGGAAACTCCTTCCTGATGACGATGATCTGTTTTCTGGTGTTGTTGATGAGCTAGGATACAATTCTCATACCAAAACAAATGATGACTTGGAAGATTTTGATTTGTTTAGCAGTGGTGGAGGGATGGAGCTGGAAGGAGATGAACATTTATGTTCAGGAAAAAGAACAAATAGTCTGGTTGGAGATTCTGGTTTCTTTGGAGGATCTAAAGGAAAACTTTCTTTTGGTGAACAGCCTTCTAGAACACTTCTTGTTAGAAACATCAATAGTAATGTAGAAGACTCAGAGCTAAGGGCTCTTTTTGAGCAATATGGAGATATCCAAACCATTTATACAGCCTGTAAACATCGTGGGTTTGTTATGATTTCCTATTATGACACAAGGGAAGCACAAAATGCAATGCAAGCACTTCAAAATAGGCCATTGAGGTCTAGGAAACTTGATATACATTATTCAATTCCAAAGGTCAATGCTCCAGAGAAGGATATTGGCCATGGTACGCTGATGCTATCTGGTCTTGATTCATCTGTTTTAAATGATGAGCTTAAGCATATTTTTGGATTTTATGGAGAAATTAAAGAGATCTATAAATATCCCGAAATGAGTCATCACAAATTTATAGAGTTTTATGATGTGAGAGCTGCAGAAGCTGCTCTTCGTGCATTGAACAGGATTGAAATTGCTGGGAAGCAGATTAAGCTTGAACCTGGCCATCCTAGGTCCGCATTATGTCTGATGCAGCGGTCTCACAAGGGGCGAGATGAACGAGATCTTGGCCATGGTATTGTTGACAACTTTTCATTGAGACAAAAGTCAACAGTGTCTTCTGGAGTAGTTGGATCTGGCTGCTTGGAAAATGGATATAATCAGAGATTTCAATCTGCAATGCGGCAACCTTTGAATGCATTTATTGATAATGCATTCTTTCATGCAAATTCTAGCATTCACAACAGTATGAGAGGGTCGTTTGCTGGAAATGTGTCTAGCGTTTCTGAGTCCAGTAACTTTGTTGATAGAATGAAACTTGCATCTAGTCCAAGTTTTCATCCTCATTCTTTGCCAGAGTTTCATGGTAGTTTAGCTAATGGTAGCCCTTATAACTTTTCAAGCACCAATAGCAACATGGCTAGAAATATAGGTACTGGAGGAACAGAAGCTACTGATGGCAGGCATATTCAGGGTATGAGCTCAACTGGAAACTTAGCAGAATTTAATGGAGGAGGAAATGGGATCCGCCCGCATCATGGACTTTATCATATGTGGAACAGCTCCAATTTGCATCAGCAACCTTCATCAAGTACCATGCTTTGGAAGAAAACACCATCATTTGTTAATGGTGCTTGTGCTCCATGCCTTCCGCAGAGGCCTAGCTTTGCTAGAACACCACCTCATATGCTGAGAACACATGTGGATCATCCTGTTGGATCAGCACCAGTTGTTGCATCCCTGCCCTGGGAAAAGAAAAATTCTTACTTGGGAGAGTCCCCTGAGGCTTCTGGTTTTCACTTGGATTCTCTAGGAAGTGGAGGGTTTCATGGTTCCTGGCAATTGCATCCACTGGATTTTTCTTCTGACATGTTTTCTCATGTTGGTGGGAATGGCACTGAACTGACAGCTAATGCTGCACAGAGCTCTCCTAAGCAGTTGTCACATGTTCTCTCTGGGACACATCCTATGACTTTAATGTCAAAATTTGATTCTACCAATGAACGAATGAGAAGCCTTTATCATCGTAGAAGTGAAGCAAACACCAACAATGTTGATAAAAAACAATATGAACTTGACTTGGGTCGCATAATGCGAGGGGAAGACATCCGAACAACCCTTATGATAAAAAATATTCCCAACAAGTATACTTCAAAGATGCTTCTTGCTGCCATAGATGAGCAATGTAAGGGAACATATGACTTTCTGTACTTACCAATCGACTTCAAGGCAAGTATCTATTTTTGGTTGCAGAACAAATGTAATGTTGGCTATGCATTCATAAATATGATTGATCCTGTTCAAATTATTCCTTTCCACCAGGTTATTTTAAATTCCCAGGCTTTTAATGGGAAAAAATGGGAGAAGTTTAACAGTGAAAAAGTAGCCTCACTTGCATATGCCCGGATTCAAGGAAAAACTTCTCTTGTTGCTCATTTCCAGAATTCAAGCCTGATGAATGAAGATAAACGTTGCCGCCCTATTCTCTTCCATACAGATGGCCCAAATGCCGGTGATCCGGAGCCTTTTCCGGTGGGCGCCAATATTATATTGAGACCTGGAAAATCTCGCACCGCTGGCAATGAGGGGAATCCTTCAACTTTGGCGAGCGGAGAAGAGTCTGCTAATGGAATAGATTCTTGA 2916 0.4108 MPFQIMDQRGVSASSHFFDDISFHSERNVGLQKPKYINDQHPQGKNGMIASPGSIMNAPSPLEVNANSGLSMSQTSLSGESTVKLYFGGEEGVVDVLKDSKESSHYHPKSWSDACMPSAPTSYGLIGKKIVTCAAPCESSLFSSSLSEIFIQNLRLFGNDVLSEEPITVDYLPEDEPYKSLEEMEADTIGKLLPDDDDLFSGVVDELGYNSHTKTNDDLEDFDLFSSGGGMELEGDEHLCSGKRTNSLVGDSGFFGGSKGKLSFGEQPSRTLLVRNINSNVEDSELRALFEQYGDIQTIYTACKHRGFVMISYYDTREAQNAMQALQNRPLRSRKLDIHYSIPKVNAPEKDIGHGTLMLSGLDSSVLNDELKHIFGFYGEIKEIYKYPEMSHHKFIEFYDVRAAEAALRALNRIEIAGKQIKLEPGHPRSALCLMQRSHKGRDERDLGHGIVDNFSLRQKSTVSSGVVGSGCLENGYNQRFQSAMRQPLNAFIDNAFFHANSSIHNSMRGSFAGNVSSVSESSNFVDRMKLASSPSFHPHSLPEFHGSLANGSPYNFSSTNSNMARNIGTGGTEATDGRHIQGMSSTGNLAEFNGGGNGIRPHHGLYHMWNSSNLHQQPSSSTMLWKKTPSFVNGACAPCLPQRPSFARTPPHMLRTHVDHPVGSAPVVASLPWEKKNSYLGESPEASGFHLDSLGSGGFHGSWQLHPLDFSSDMFSHVGGNGTELTANAAQSSPKQLSHVLSGTHPMTLMSKFDSTNERMRSLYHRRSEANTNNVDKKQYELDLGRIMRGEDIRTTLMIKNIPNKYTSKMLLAAIDEQCKGTYDFLYLPIDFKASIYFWLQNKCNVGYAFINMIDPVQIIPFHQVILNSQAFNGKKWEKFNSEKVASLAYARIQGKTSLVAHFQNSSLMNEDKRCRPILFHTDGPNAGDPEPFPVGANIILRPGKSRTAGNEGNPSTLASGEESANGIDS. 972
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Seca12g06385 971 CDD RRM1_MEI2_like 269 344 IPR034453 -
Seca12g06385 971 MobiDBLite consensus disorder prediction 950 971 - -
Seca12g06385 971 Pfam RNA recognition motif 2 795 905 IPR007201 -
Seca12g06385 971 CDD RRM3_MEI2_like 798 897 IPR034454 -
Seca12g06385 971 SUPERFAMILY RNA-binding domain, RBD 267 429 IPR035979 GO:0003676
Seca12g06385 971 SUPERFAMILY RNA-binding domain, RBD 797 895 IPR035979 GO:0003676
Seca12g06385 971 SMART rrm1_1 356 424 IPR000504 GO:0003723
Seca12g06385 971 SMART rrm1_1 271 339 IPR000504 GO:0003723
Seca12g06385 971 Gene3D - 262 352 IPR012677 -
Seca12g06385 971 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 270 343 IPR000504 GO:0003723
Seca12g06385 971 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 355 428 IPR000504 GO:0003723
Seca12g06385 971 FunFam MEI2-like protein 5 isoform 2 259 353 - -
Seca12g06385 971 FunFam Protein MEI2-like 1 354 448 - -
Seca12g06385 971 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 272 336 IPR000504 GO:0003723
Seca12g06385 971 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 357 422 IPR000504 GO:0003723
Seca12g06385 971 MobiDBLite consensus disorder prediction 944 971 - -
Seca12g06385 971 Gene3D - 353 447 IPR012677 -
Seca12g06385 971 PANTHER RNA RECOGNITION MOTIF-CONTAINING 112 968 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Seca12g06385 Seca-Chr12 155841037 155849872 Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g06385 268 444 Eukaryotic Initiation Factors Gene Family AT1G71770 24.731 4.10e-08 55.5
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g06385 - - gmx:100797893 1483.77
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g06385 12 155841037 155849872 Seca4g01795 4 29622749 29630770 PCT