Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g06383 ATGGAATTTTGGGGTGTTGAGGTTAAGGCTAGGCAATCTGTCAAGGTAGACCTAGCGGATGAATTTATTGGATACATACACATTTCTCAGGTTGCACTTGGGGAGGCAAAGAAAGACAAAACAAATGAACTTGTTGTTTTGTACTTGAAAGTTGATGACCAGAAGTTTGTTTTGGGAACTCTTACTAGGAATGATGTCCCTCAGCTATCTATGGATTTAGTTTTGGACAAGTTTTATGAGCATTCACACAATTCAAAAGATGCTAGTGTCTATTTTTGCGGATACAAAGTTATAGCTGGGGATGCTGATATTTCTGACTTTTCTGATAGTGATGATAATCTTGCCTTGAATGACCAAGAAAATGGAAAACCTGAAACAAAATCTGTACTTGCAAAGGTTGCTAAAGCTGGAAAACCTGTTGCCATGACTGGTGCATCAGCAAAACAAGAGAAGATTGTTGATCCAAAGGTTATCACTATGAACCACCCTGGTCAAATTGGTAATGATTATGCTCTAGTGCTTGATTGCCACACTTCACAAATTGCTGTCAAGTTTTCTGAGCTCTTGACCAAGATTGTTAGGCGATCAGGAGAGCTTCAGAAGGAGCCCAAGTTCTTGAAGAATGGTGATGCAAGGATGATGAAGATGGTTCCCACAACACTTATGGTTGTTGATACTTTCTCTTGGTTCTCTTGGTTTCAAGTTGGTATTGGTTAA 717 0.3933 MEFWGVEVKARQSVKVDLADEFIGYIHISQVALGEAKKDKTNELVVLYLKVDDQKFVLGTLTRNDVPQLSMDLVLDKFYEHSHNSKDASVYFCGYKVIAGDADISDFSDSDDNLALNDQENGKPETKSVLAKVAKAGKPVAMTGASAKQEKIVDPKVITMNHPGQIGNDYALVLDCHTSQIAVKFSELLTKIVRRSGELQKEPKFLKNGDARMMKMVPTTLMVVDTFSWFSWFQVGIG. 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g06383 238 Pfam Nucleoplasmin-like domain 3 96 IPR041232 -
Seca12g06383 238 Pfam Elongation factor Tu C-terminal domain 148 231 IPR004160 -
Seca12g06383 238 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 156 230 IPR009001 -
Seca12g06383 238 Gene3D Translation factors 151 234 - -
Seca12g06383 238 FunFam Histone deacetylase HDT1 1 101 - -
Seca12g06383 238 Gene3D Nucleoplasmin core domain 1 101 - -
Seca12g06383 238 PANTHER ELONGATION FACTOR 1 ALPHA 154 230 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g06383 Seca-Chr12 155824226 155824942 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g06383 156 230 Eukaryotic Initiation Factors Gene Family AT1G07930 76.316 9.84e-33 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g06383 - - gmx:547649 176.792