Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g06381 ATGAAGGATGAGGAGATTGACGACATGATGAACAACCTCTCCCAGATTTTTCGCTGGGATCTCCTCGTCGGTGAACGATACGGCATCAAAGCTGCCATTAGAGCCGAGAGAAGACGCATTCACGGCCATGACATGAGGCGTCGCAACCCTCTCTCCGCCGACACAATGCAACAAGAAAAAGAGGCCGAGAGGAGGAAGGGGCAGCGGAGGAGAAGGAGAATGAAGAGGAATCACGATGATGGTGATGAGAATGAAGATCCTGAAGATGATGATGAAGGGAGGCAAAGAGAGAACCCTTTCATTGTGACGGAGCCTGGGGAGGTTGCACGTGGCAAAAAGAACGGCCTTGATTATCTCTTCCACCTCTACGACCAATGCCGTCACTTCTTGATTCAGGTTCAGAACATCGCCAAGAACCGTGGTGAAAAATGCCCCACCAAGGTGACAAACGAGGTGTTTAGATACGCCAAGAAGGCAGGAGCGAGTTACATTAACAAGCCTAAAATGCGACACTACGTTCATTGCTATGCGTTGCATATTCTTGACGAGGAGGCATCGAATGAACTGAGAAGGGGTTTGAAGGAGAGAGGGGAGAACGTTGGGGCGTGGAGGCAAGCATGTTACAAACCGCTTGTGGCTATAGCAGGGCTTCAAGGTTGGGACATTGATGCCATATTCAATGCAGATCCTCGACTTTCTATATGGTATGTGCCAACTAAACTCCGTCAGCTTTGTCACGCCGAGAGGAACAACAACGCTGCTTCAAGCTCTGTCTCTGTCGGCAGCGCCCACCTTCCTTTTTAA 804 0.5 MKDEEIDDMMNNLSQIFRWDLLVGERYGIKAAIRAERRRIHGHDMRRRNPLSADTMQQEKEAERRKGQRRRRRMKRNHDDGDENEDPEDDDEGRQRENPFIVTEPGEVARGKKNGLDYLFHLYDQCRHFLIQVQNIAKNRGEKCPTKVTNEVFRYAKKAGASYINKPKMRHYVHCYALHILDEEASNELRRGLKERGENVGAWRQACYKPLVAIAGLQGWDIDAIFNADPRLSIWYVPTKLRQLCHAERNNNAASSSVSVGSAHLPF. 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g06381 267 Pfam Floricaula / Leafy protein SAM domain 1 41 IPR035079 -
Seca12g06381 267 PANTHER PROTEIN LEAFY 1 63 IPR002910 GO:0003677|GO:0006355
Seca12g06381 267 Coils Coil 57 77 - -
Seca12g06381 267 MobiDBLite consensus disorder prediction 41 107 - -
Seca12g06381 267 MobiDBLite consensus disorder prediction 46 65 - -
Seca12g06381 267 Pfam DNA Binding Domain (C-terminal) Leafy/Floricaula 93 253 IPR035209 GO:0003677
Seca12g06381 267 Gene3D Protein LEAFY 91 259 IPR038276 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g06381 Seca-Chr12 155787176 155794110 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g06381 1 33 Orphan Transcription Factor Family AT5G61850 78.788 1.90e-11 62.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LFY Seca12g06381 C_LFY_FLO 3.6e-100 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g06381 - - gmx:100799720 398.667